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http://hdl.handle.net/10261/309493
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dc.contributor.author | Velasco-Amo, María Pilar | es_ES |
dc.contributor.author | Arias-Giraldo, Luis F. | es_ES |
dc.contributor.author | Ecija, Miguel Roman | es_ES |
dc.contributor.author | Fuente, L. de la | es_ES |
dc.contributor.author | Marco-Noales, E. | es_ES |
dc.contributor.author | Moralejo, Eduardo | es_ES |
dc.contributor.author | Navas Cortés, Juan Antonio | es_ES |
dc.contributor.author | Landa, Blanca B. | es_ES |
dc.date.accessioned | 2023-05-23T13:01:05Z | - |
dc.date.available | 2023-05-23T13:01:05Z | - |
dc.date.issued | 2023-06 | - |
dc.identifier.citation | Phytopathology 113(6): 1128-1132 (2023) | es_ES |
dc.identifier.issn | 0031-949X | - |
dc.identifier.uri | http://hdl.handle.net/10261/309493 | - |
dc.description.abstract | Xylella fastidiosa (Xf) is a vascular plant pathogenic bacterium native to the Americas that is causing significant epidemics and economic losses in olive and almonds in Europe, where it is a quarantine pathogen. Since its first detection in 2013 in Italy, mandatory surveys across Europe revealed the presence of the bacterium also in France, Spain, and Portugal. Combining ONT and Illumina sequencing data, we assembled high-quality complete genomes of seven Xf subsp. fastidiosa strains isolated from different plants in Spain, the USA, and Mexico. Comparative genomic analyses discovered differences in plasmid content among strains, including plasmids that had been overlooked previously when using Illumina sequencing platform alone. Interestingly, in strain CFBP8073, intercepted in France from plants imported from Mexico, three plasmids were identified, including two (plasmid pXF-P1.CFBP8073 and pXF-P2.CFBP8073) not previously described in X. fastidiosa, and one (pXF5823.CFBP8073) almost identical to a plasmid described in a Xf strain from citrus. Plasmids found in the Spanish strains here were similar to those described previously in other strains from the same subspecies and ST1 isolated in the Balearic Islands and the USA. The genome resources from this work will assist in further studies on the role of plasmids in the epidemiology, ecology, and evolution of this plant pathogen. | es_ES |
dc.description.sponsorship | This research was funded by Project BeXyl (Beyond Xylella, Integrated Management Strategies for Mitigating Xylella fastidiosa impact in Europe; Grant ID No 101060593) from European Union’s Horizon Action ‘Food, Bioeconomy Natural Resources, Agriculture and Environment’ Programme; Project E-RTA2017-00004-C06-02 (Desarrollo de estrategias de erradicación, contención y control de X. fastidiosa enEspaña) from ‘Programa Estatal de I+D+I Orientada a los Retos de la Sociedad of the Spanish Government AEI-INIA Spain’ and The Spanish Olive Oil Interprofesional; and the Thematic Interdisciplinary Platform on X. fastidiosa from CSIC (PTI Sol-Xyl). Financial support from the Spanish Ministry of Agriculture and Fisheries to the Institute for Sustainable Agriculture is also acknowledged. L.D.F. was a recipient of a research fellowship awarded by the Organization for Economic Co-operation and Development (OECD), Co-operative Research Programme (CRP), during the writing of this manuscript. M. P. Velasco Amo is recipient of a contract financed by the Intramural Project 178 201840E111 from CSIC. | es_ES |
dc.format | application/pdf | es_ES |
dc.language.iso | eng | es_ES |
dc.publisher | American Phytopathological Society | es_ES |
dc.relation | info:eu-repo/grantAgreement/EC/HE/101060593 | es_ES |
dc.relation | info:eu-repo/grantAgreement/AEI//E-RTA2017-00004-C06-02 | es_ES |
dc.relation.isversionof | Publisher's version | es_ES |
dc.relation.isbasedon | The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI https://doi.org/10.1094/PHYTO-10-22-0396-A | es_ES |
dc.rights | openAccess | es_ES |
dc.subject | Bacterial pathogens | es_ES |
dc.subject | Bioinformatics | es_ES |
dc.subject | Ecology | es_ES |
dc.subject | Microbe-genome sequencing | es_ES |
dc.title | Complete circularized genome resources of seven strains of Xylella fastidiosa subsp. fastidiosa using hybrid assembly reveals unknown plasmids | es_ES |
dc.type | artículo | es_ES |
dc.identifier.doi | 10.1094/PHYTO-10-22-0396-A | - |
dc.description.peerreviewed | Peer reviewed | es_ES |
dc.relation.publisherversion | https://doi.org/10.1094/PHYTO-10-22-0396-A | es_ES |
dc.identifier.e-issn | 1943-7684 | - |
dc.rights.license | This article is in the public domain and not copyrightable. | es_ES |
dc.contributor.funder | European Commission | es_ES |
dc.contributor.funder | Agencia Estatal de Investigación (España) | es_ES |
dc.contributor.funder | CSIC - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA) | es_ES |
dc.contributor.funder | Interprofesional del Aceite de Oliva Español | es_ES |
dc.contributor.funder | Consejo Superior de Investigaciones Científicas (España) | es_ES |
dc.contributor.funder | Ministerio de Agricultura, Pesca y Alimentación y Medio Ambiente (España) | es_ES |
dc.contributor.funder | Organisation for Economic Co-operation and Development | es_ES |
dc.relation.csic | Sí | es_ES |
oprm.item.hasRevision | no ko 0 false | * |
dc.identifier.funder | http://dx.doi.org/10.13039/501100009599 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100000780 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003339 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100011033 | es_ES |
dc.identifier.pmid | 36441872 | - |
dc.type.coar | http://purl.org/coar/resource_type/c_6501 | es_ES |
item.openairetype | artículo | - |
item.fulltext | With Fulltext | - |
item.grantfulltext | open | - |
item.languageiso639-1 | en | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.cerifentitytype | Publications | - |
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