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Additional file 1 of On the holobiont ‘predictome’ of immunocompetence in pigs

AutorCalle-García, Joan; Ramayo-Caldas, Yuliaxis; Zingaretti, Laura M. CSIC ORCID; Quintanilla, Raquel; Ballester, María CSIC ORCID; Pérez-Enciso, Miguel CSIC ORCID
Palabras claveUse one source
Uniformly best across
Still largely unexplored
Microbial clustering strategies
Including immune response
Gut bacterial communities
e ., concentration
Different modelling strategies
Clustering microbial abundances
70 k snps
400 duroc pigs
Used phenotypic data
Host genomic information
Clustering microbial data
Six immunity traits
Predicting immunocompetence traits
Microbiota data
Innate immunity
Numerous traits
Complex traits
Wide catalogue
Variance explained
Results overall
Relative abundance
Reactive protein
Predictive capacity
Predictive accuracy
Natural step
Microbiome data
Host genotype
Greater variability
Ensemble method
Fecha de publicación2-may-2023
EditorFigshare
CitaciónCalle-García, Joan; Ramayo-Caldas, Yuliaxis; Zingaretti, Laura M.; Quintanilla, Raquel; Ballester, María; Pérez-Enciso, Miguel; 2023; Additional file 1 of On the holobiont ‘predictome’ of immunocompetence in pigs [Dataset]; Figshare; Version 1; https://doi.org/10.6084/m9.figshare.22729267.v1
ResumenAdditional file 1: QIIME2 pipeline used to process and combine the two 16S sequence datasets.
Versión del editorhttps://doi.org/10.6084/m9.figshare.22729267.v1
URIhttp://hdl.handle.net/10261/335659
DOI10.6084/m9.figshare.22729267.v1
ReferenciasCalle-García, Joan; Ramayo-Caldas, Yuliaxis; Zingaretti, Laura M.; Quintanilla, Raquel; Ballester, María; Pérez-Enciso, Miguel. On the holobiont 'predictome' of immunocompetence in pigs. https://doi.org/10.1186/s12711-023-00803-4. http://hdl.handle.net/10261/335588
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