Supplementary Information: Human follicular mites: Ectoparasites becoming symbionts

Smith, Gilbert; Manzano-Marín, Alejandro; Reyes-Prieto, Mariana; Ribeiro Antunes, Cátia Sofia; Ashworth, Victoria; Nanjul Goselle, Obed; Jan, Abdulhalem Abdulsamad A.; Moya, Andrés; Latorre, Amparo; Perotti, M. Alejandra; Braig, Henk R.

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Título:	Supplementary Information: Human follicular mites: Ectoparasites becoming symbionts
Autor:	Smith, Gilbert; Manzano-Marín, Alejandro; Reyes-Prieto, Mariana; Ribeiro Antunes, Cátia Sofia; Ashworth, Victoria; Nanjul Goselle, Obed; Jan, Abdulhalem Abdulsamad A.; Moya, Andrés CSIC ORCID; Latorre, Amparo CSIC ORCID; Perotti, M. Alejandra; Braig, Henk R.
Fecha de publicación:	2022
Editor:	Oxford University Press
Citación:	Smith, Gilbert; Manzano-Marín, Alejandro; Reyes-Prieto, Mariana; Ribeiro Antunes, Cátia Sofia; Ashworth, Victoria; Nanjul Goselle, Obed; Jan, Abdulhalem Abdulsamad A.; Moya, Andrés; Latorre, Amparo; Perotti, M. Alejandra; Braig, Henk R.; 2022; Supplementary Information: Human follicular mites: Ectoparasites becoming symbionts [Dataset]; Oxford University Press; https://doi.org/10.1093/molbev/msac125
Descripción:	1 Supplementary Figures and Table: Fig. S1 Demodex is maternally inherited -Fig. S2 Functions of rapidly evolving gene families of Demodex and Acariformes -Fig. S3 Mitochondrial genome has polycistrons -Fig. S4 Distribution of the RELAX parameter K across significant selection tests - Fig. S5 Host association determines extend of AT-bias of invertebrate and vertebrate- animals -Tab. S1 Intergenic distances and introns -Fig. S6 Endopolyploidy in Demodex 2 Supplementary Items (SI): -SI 1 Benchmarking Universal Single Copy Orthologs -Fig. SI 2 Length distribution of proteins in parasitic/endosymbiotic Demodex and freeliving/plant-parasitic Tetranychus -Tab. SI 1 Probably pseudogenes of Demodex arranged according to Demodex AA length -Tab. SI 2 Orthogroups of Demodex rapidly expanding -Tab. SI 3 Minimal genome sizes and number of coding genes per taxonomic clade in the Pan-Arthropoda -Tab. SI 4 Species used in genome analysis -Tab. SI 5 Repeat content of mite genomes -Tab. SI 6 Intergenic distances and introns -Fig. SI 3 Host association determines extend of AT-bias of Acariformes -Fig. SI 4 Genome-wide codon usage bias in Acariformes -Fig. SI 5 Mutation spectrum for Demodex demonstrates an AT-mutational bias -Tab. SI 7 Orthogroups (OGs) of arthropod species -Tab. SI 8 Computational analysis of gene family evolution model parameters -Fig. SI 6 Computational Analysis of Gene Family Evolution Ihtest histogram -Fig. SI 7 Alternative IQtree topologies -Tab. SI 9 Gene families showing rapid contraction in Demodex -Tab. SI 10 Gene families showing rapid contraction in the Acariformes -Tab. SI 11 Gene families showing rapid expansion in the Acariformes -Tab. SI 12 Gene family loss in Demodex -Tab. SI 13 Gene family loss in the Acariformes -Tab. SI 14 RELAX test significant orthogroups -Tab. SI 15 Relaxed selection enrichment -Tab. SI 16 Intensified selection enrichment -Tab. SI 17 Counting of nuclei in Drosophila melanogaster -Tab. SI 18 Histidine pathway genes.
URI:	http://hdl.handle.net/10261/330896
DOI:	10.1093/molbev/msac125
Referencias:	Smith, Gilbert; Manzano-Marín, Alejandro; Reyes-Prieto, Mariana; Ribeiro Antunes, Cátia Sofia; Ashworth, Victoria; Nanjul Goselle, Obed; Jan, Abdulhalem Abdulsamad A.; Moya, Andrés; Latorre, Amparo; Perotti, M. Alejandra; Braig, Henk R.. Human follicular mites: Ectoparasites becoming symbionts. https://doi.org/10.1093/molbev/msac125. http://hdl.handle.net/10261/285840
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