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http://hdl.handle.net/10261/304378
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dc.contributor.author | Tarlachkov, Sergey V. | es_ES |
dc.contributor.author | Efeykin, Boris D. | es_ES |
dc.contributor.author | Castillo, Pablo | es_ES |
dc.contributor.author | Evtushenko, Lyudmila I. | es_ES |
dc.contributor.author | Subbotin, Sergei A. | es_ES |
dc.date.accessioned | 2023-03-27T08:45:07Z | - |
dc.date.available | 2023-03-27T08:45:07Z | - |
dc.date.issued | 2023-02-02 | - |
dc.identifier.citation | International Journal of Molecular Sciences 24(3): 2905 (2023) | es_ES |
dc.identifier.issn | 1661-6596 | - |
dc.identifier.uri | http://hdl.handle.net/10261/304378 | - |
dc.description.abstract | Bacteria of the genus "Candidatus Cardinium" and related organisms composing the Cardinium clade are intracellular endosymbionts frequently occurring in several arthropod groups, freshwater mussels and plant-parasitic nematodes. Phylogenetic analyses based on two gene sequences (16S rRNA and gyrB) showed that the Cardinium clade comprised at least five groups: A, B, C, D and E. In this study, a screening of 142 samples of plant-parasitic nematodes belonging to 93 species from 12 families and two orders using PCR with specific primers and sequencing, revealed bacteria of Cardinium clade in 14 nematode samples belonging to 12 species of cyst nematodes of the family Heteroderidae. Furthermore, in this study, the genome of the Cardinium cHhum from the hop cyst nematode, Heterodera humuli, was also amplified, sequenced and analyzed. The comparisons of the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values for the strain Cardinium cHhum with regard to related organisms with available genomes, combined with the data on 16S rRNA and gyrB gene sequence identities, showed that this strain represents a new candidate species within the genus "Candidatus Paenicardinium". The phylogenetic position of endosymbionts of the Cardinium clade detected in nematode hosts was also compared to known representatives of this clade from other metazoans. Phylogenetic reconstructions based on analysis of 16S rRNA, gyrB, sufB, gloEL, fusA, infB genes and genomes and estimates of genetic distances both indicate that the endosymbiont of the root-lesion nematode Pratylenchus penetrans represented a separate lineage and is designated herein as a new group F. The phylogenetic analysis also confirmed that endosymbionts of ostracods represent the novel group G. Evolutionary relationships of bacterial endosymbionts of the Cardinium clade within invertebrates are presented and discussed. | es_ES |
dc.description.sponsorship | This work was partly supported by USDA APHIS Farm Bill grants: AP18PPQS& T00C201/18-0430-000-FR and AP20PPQS&T00C078/20-0256-000-FR and by a grant from the Ministry of Science and Higher Education of the Russian Federation (Grant agreement № 075-15-2021-1051). B.D.E acknowledges support from a Russian Science Foundation grant (19-74-20147). | es_ES |
dc.format | application/pdf | es_ES |
dc.language.iso | eng | es_ES |
dc.publisher | Multidisciplinary Digital Publishing Institute | es_ES |
dc.relation.isversionof | Publisher's version | es_ES |
dc.relation.isbasedon | The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI https://doi.org/10.3390/ijms24032905 | es_ES |
dc.rights | openAccess | es_ES |
dc.subject | Phylogeny | es_ES |
dc.subject | Cardinium | es_ES |
dc.subject | Paenicardinium | es_ES |
dc.subject | Genome | es_ES |
dc.subject | Nematodes | es_ES |
dc.subject | Novel group | es_ES |
dc.title | Distribution of Bacterial Endosymbionts of the Cardinium Clade in Plant-Parasitic Nematodes | es_ES |
dc.type | artículo | es_ES |
dc.identifier.doi | 10.3390/ijms24032905 | - |
dc.description.peerreviewed | Peer reviewed | es_ES |
dc.relation.publisherversion | https://doi.org/10.3390/ijms24032905 | es_ES |
dc.identifier.e-issn | 1422-0067 | - |
dc.rights.license | https://creativecommons.org/licenses/by/4.0/ | es_ES |
dc.contributor.funder | Department of Agriculture (US) | es_ES |
dc.contributor.funder | Animal and Plant Health Inspection Service (US) | es_ES |
dc.contributor.funder | Ministry of Science and Higher Education of the Russian Federation | es_ES |
dc.contributor.funder | Russian Science Foundation | es_ES |
dc.relation.csic | Sí | es_ES |
oprm.item.hasRevision | no ko 0 false | * |
dc.identifier.funder | http://dx.doi.org/10.13039/501100006769 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/100000199 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/100009168 | es_ES |
dc.contributor.orcid | Castillo, Pablo [0000-0003-0256-876X] | es_ES |
dc.identifier.pmid | 36769231 | - |
dc.identifier.scopus | 2-s2.0-85147894726 | - |
dc.identifier.url | https://api.elsevier.com/content/abstract/scopus_id/85147894726 | - |
dc.type.coar | http://purl.org/coar/resource_type/c_6501 | es_ES |
item.openairetype | artículo | - |
item.fulltext | With Fulltext | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.cerifentitytype | Publications | - |
item.grantfulltext | open | - |
item.languageiso639-1 | en | - |
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Plant-Parasitic-Nematodes.pdf | 3,53 MB | Adobe PDF | Visualizar/Abrir |
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