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dc.contributor.authorVlasova, Anna-
dc.contributor.authorSaburido Álvarez, María Soledad-
dc.contributor.authorGarcía, José Luís-
dc.contributor.authorSantalla Ferradás, Marta-
dc.contributor.authorGuigó, Roderic-
dc.date.accessioned2018-04-24T07:55:13Z-
dc.date.available2018-04-24T07:55:13Z-
dc.date.issued2016-02-25-
dc.identifiere-issn: 1474-760X-
dc.identifier.citationGenome Biology 17: 32 (2016)-
dc.identifier.urihttp://hdl.handle.net/10261/164061-
dc.descriptionVlasova, Anna et. al.-
dc.description.abstractWe report the genome and the transcription atlas of coding and non-coding genes of a Mesoamerican genotype of common bean (Phaseolus vulgaris L., BAT93). Using a comprehensive phylogenomics analysis, we assessed the past and recent evolution of common bean, and traced the diversification of patterns of gene expression following duplication. We find that successive rounds of gene duplications in legumes have shaped tissue and developmental expression, leading to increased levels of specialization in larger gene families. We also find that many long non-coding RNAs are preferentially expressed in germ-line-related tissues (pods and seeds), suggesting that they play a significant role in fruit development. Our results also suggest that most bean-specific gene family expansions, including resistance gene clusters, predate the split of the Mesoamerican and Andean gene pools.-
dc.description.sponsorshipThis work was supported by Ibero-American Programme for Science, Technology and Development - CYTED (PhasIbeAm project); Spanish Government - Ministry of Economy and Competitiveness (EUI2009-04052, BIO2011-26205); Brazilian Government — National Council for Scientific and Technological Development - CNPq/Prosul (490725/2010-4) and Brazilian Agricultural Research Corporation - Embrapa (MP2-0212000050000); Ministerio de Ciencia, Tecnología e Innovación Productiva de la República Argentina; the European Molecular Biology Laboratory; Consejo Nacional de Ciencia y Tecnología - Conacyt, Mexico (J010-214- 2009) for financial support to undertake parts of research presented in this study. We acknowledge support of the Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013-2017’, SEV-2012-0208 and Instituto Nacional de Bioinformatica (INB, Project PT13/0001/0021, ISCIII —Subdirección General de Evaluación y Fomento de la Investigación/FEDER “Una Manera de hacer Europa”).-
dc.publisherBioMed Central-
dc.relation.isversionofPublisher's version-
dc.rightsopenAccess-
dc.subjectlncRNAs-
dc.subjectTranscriptome-
dc.subjectTissue expression-
dc.subjectCommon bean-
dc.subjectBAT93-
dc.subjectGene duplication-
dc.titleGenome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes-
dc.typeartículo-
dc.relation.publisherversionhttp://dx.doi.org/10.1186/s13059-016-0883-6-
dc.date.updated2018-04-24T07:55:13Z-
dc.description.versionPeer Reviewed-
dc.language.rfc3066eng-
dc.contributor.funderMinisterio de Ciencia, Tecnología e Innovación Productiva (Argentina)-
dc.contributor.funderEuropean Molecular Biology Laboratory-
dc.contributor.funderConsejo Nacional de Ciencia y Tecnología (México)-
dc.contributor.funderInstituto de Salud Carlos III-
dc.contributor.funderConselho Nacional de Desenvolvimento Científico e Tecnológico (Brasil)-
dc.contributor.funderMinisterio de Economía y Competitividad (España)-
dc.contributor.funderPrograma Iberoamericano de Ciencia y Tecnología para el Desarrollo-
dc.contributor.funderEmpresa Brasileira de Pesquisa Agropecuária-
dc.relation.csic-
dc.identifier.funderhttp://dx.doi.org/10.13039/501100004587es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/501100003141es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/501100003046es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/501100003329es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/501100003593es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/501100003033es_ES
dc.identifier.funderhttp://dx.doi.org/10.13039/100013060es_ES
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