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dc.contributor.author | Vlasova, Anna | - |
dc.contributor.author | Saburido Álvarez, María Soledad | - |
dc.contributor.author | García, José Luis | - |
dc.contributor.author | Santalla Ferradás, Marta | - |
dc.contributor.author | Guigó, Roderic | - |
dc.date.accessioned | 2018-04-24T07:55:13Z | - |
dc.date.available | 2018-04-24T07:55:13Z | - |
dc.date.issued | 2016-02-25 | - |
dc.identifier | e-issn: 1474-760X | - |
dc.identifier.citation | Genome Biology 17: 32 (2016) | - |
dc.identifier.uri | http://hdl.handle.net/10261/164061 | - |
dc.description | Vlasova, Anna et. al. | - |
dc.description.abstract | We report the genome and the transcription atlas of coding and non-coding genes of a Mesoamerican genotype of common bean (Phaseolus vulgaris L., BAT93). Using a comprehensive phylogenomics analysis, we assessed the past and recent evolution of common bean, and traced the diversification of patterns of gene expression following duplication. We find that successive rounds of gene duplications in legumes have shaped tissue and developmental expression, leading to increased levels of specialization in larger gene families. We also find that many long non-coding RNAs are preferentially expressed in germ-line-related tissues (pods and seeds), suggesting that they play a significant role in fruit development. Our results also suggest that most bean-specific gene family expansions, including resistance gene clusters, predate the split of the Mesoamerican and Andean gene pools. | - |
dc.description.sponsorship | This work was supported by Ibero-American Programme for Science, Technology and Development - CYTED (PhasIbeAm project); Spanish Government - Ministry of Economy and Competitiveness (EUI2009-04052, BIO2011-26205); Brazilian Government — National Council for Scientific and Technological Development - CNPq/Prosul (490725/2010-4) and Brazilian Agricultural Research Corporation - Embrapa (MP2-0212000050000); Ministerio de Ciencia, Tecnología e Innovación Productiva de la República Argentina; the European Molecular Biology Laboratory; Consejo Nacional de Ciencia y Tecnología - Conacyt, Mexico (J010-214- 2009) for financial support to undertake parts of research presented in this study. We acknowledge support of the Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013-2017’, SEV-2012-0208 and Instituto Nacional de Bioinformatica (INB, Project PT13/0001/0021, ISCIII —Subdirección General de Evaluación y Fomento de la Investigación/FEDER “Una Manera de hacer Europa”). | - |
dc.publisher | BioMed Central | - |
dc.relation.isversionof | Publisher's version | - |
dc.rights | openAccess | - |
dc.subject | lncRNAs | - |
dc.subject | Transcriptomes | - |
dc.subject | Tissue expression | - |
dc.subject | Common bean | - |
dc.subject | BAT93 | - |
dc.subject | Gene duplication | - |
dc.title | Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes | - |
dc.type | artículo | - |
dc.relation.publisherversion | http://dx.doi.org/10.1186/s13059-016-0883-6 | - |
dc.date.updated | 2018-04-24T07:55:13Z | - |
dc.description.version | Peer Reviewed | - |
dc.language.rfc3066 | eng | - |
dc.contributor.funder | Ministerio de Ciencia, Tecnología e Innovación Productiva (Argentina) | - |
dc.contributor.funder | European Molecular Biology Laboratory | - |
dc.contributor.funder | Consejo Nacional de Ciencia y Tecnología (México) | - |
dc.contributor.funder | Instituto de Salud Carlos III | - |
dc.contributor.funder | Conselho Nacional de Desenvolvimento Científico e Tecnológico (Brasil) | - |
dc.contributor.funder | Ministerio de Economía y Competitividad (España) | - |
dc.contributor.funder | Programa Iberoamericano de Ciencia y Tecnología para el Desarrollo | - |
dc.contributor.funder | Empresa Brasileira de Pesquisa Agropecuária | - |
dc.relation.csic | Sí | - |
dc.identifier.funder | http://dx.doi.org/10.13039/501100004587 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003141 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003046 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003329 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003593 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100003033 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/100013060 | es_ES |
dc.type.coar | http://purl.org/coar/resource_type/c_6501 | es_ES |
item.cerifentitytype | Publications | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.grantfulltext | open | - |
item.openairetype | artículo | - |
item.fulltext | With Fulltext | - |
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