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openAccesss41586-020-2876-6.pdf.jpg12-nov-2020A comparative genomics multitool for scientific discovery and conservationGenereux, Diane P.; Serres-Armero, Aitor CSIC; Armstrong, Joel; Johnson, Jeremy; Marinescu, Voichita D.; Murén, Eva; Juan, David CSIC ORCID ; Bejerano, Gill; Casewell, Nicholas R.; Chemnick, Leona G.; Damas, Joana; Di Palma, Federica; Diekhans, Mark; Fiddes, Ian T.; Garber, Manuel; Gladyshev, Vadim N.; Goodman, Linda; Haerty, Wilfried; Houck, Marlys L.; Hubley, Robert; Kivioja, Teemu; Koepfli, Klaus-Peter; Kuderna, Lukas F. K. CSIC ORCID; Lander, Eric S.; Meadows, Jennifer R.S.; Murphy, William J.; Nash, Will; Noh, Hyun Ji; Nweeia, Martin; Pfenning, Andreas R.; Pollard, Katherine S.; Ray, David A.; Shapiro, Beth; Smit, Arian F. A.; Springer, Mark S.; Steiner, Cynthia C.; Swofford, Ross; Taipale, Jussi; Teeling, Emma C.; Turner-Maier, Jason; Alfoldi, Jessica; Birren, Bruce; Ryder, Oliver A.; Lewin, Harris A.; Paten, Benedict; Marqués-Bonet, Tomàs CSIC ORCID ; Lindblad-Toh, Kerstin; Karlsson, Elinor K.artículo
closedAccessaccesoRestringido.pdf.jpg1-sep-2005A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptorsJuan, David CSIC ORCID ; Mellado, Mario CSIC ORCID ; Rodríguez-Frade, José Miguel CSIC ORCID CVN; Hernanz-Falcón, Patricia; Serrano Moral, Antonio CSIC ORCID ; Sol, Antonio del; Valencia, Alfonso; Martínez-A, Carlos CSIC ORCID; Rojas Mendoza, Ana M. CSIC ORCID artículo
closedAccessaccesoRestringido.pdf.jpg2-jun-2023A global catalog of whole-genome diversity from 233 primate speciesKuderna, Lukas F. K. CSIC ORCID; Gao, Hong; Janiak, Mareike C.; Kuhlwilm, Martin CSIC ORCID; Orkin, Joseph D.; Bataillon, Thomas; Manu, Shivakumara; Valenzuela, Alejandro CSIC ORCID; Bergman, Juraj; Rousselle, Marjolaine; Silva, Felipe Ennes; Agueda, Lidia; Blanc, Julie; Gut, Marta; Vries, Dorien de; Goodhead, Ian; Harris, R. Alan; Raveendran, Muthuswamy; Jensen, Axel; Chuma, Idrissa S.; Horvath, Julie E.; Hvilsom, Christina; Juan, David CSIC ORCID ; Frandsen, Peter; Schraiber, Joshua G.; Melo, Fabiano R. de; Bertuol, Fabrício; Byrne, Hazel; Sampaio, Iracilda; Farias, Izeni; Valsecchi, João; Messias, Malu; Silva, Maria N. F. da; Trivedi, Mihir; Rossi, Rogerio; Hrbek, Tomas; Andriaholinirina, Nicole; Rabarivola, Clément J.; Zaramody, Alphonse; Jolly, Clifford J.; Phillips-Conroy, Jane; Wilkerson, Gregory; Abee, Christian; Simmons, Joe H.; Fernandez-Duque, Eduardo; Kanthaswamy, Sree; Shiferaw, Fekadu; Wu, Dongdong; Zhou, Long; Shao, Yong; Zhang, Guojie; Keyyu, Julius D.; Knauf, Sascha; Le, Minh D.; Lizano, Esther CSIC ORCID; Merker, Stefan; Navarro, Arcadi CSIC ORCID ; Nadler, Tilo; Khor, Chiea Chuen; Lee, Jessica; Tan, Patrick; Lim, Weng Khong; Kitchener, Andrew C.; Zinner, Dietmar; Gut, Ivo; Melin, Amanda D.; Guschanski, Katerina; Schierup, Mikkel Heide; Beck, Robin M. D.; Umapathy, Govindhaswamy; Roos, Christian; Boubli, Jean P.; Rogers, Jeffrey; Farh, Kyle Kai-How; Marqués-Bonet, Tomàs CSIC ORCID artículo
openAccessCAAStools_Bioinformatics_2023_OA.pdf.jpgoct-2023CAAStools: a toolbox to identify and test Convergent Amino Acid SubstitutionsBarteri, Fabio CSIC ORCID; Valenzuela, Alejandro CSIC ORCID; Farré, Xavier CSIC ORCID; Juan, David CSIC ORCID ; Muntané, Gerard CSIC ORCID; Esteve-Altava, Borja CSIC ORCID; Navarro, Arcadi CSIC ORCID artículo
closedAccessFEBSletters_DJuan_2008.pdf.jpg9-abr-2008Co-evolution and co-adaptation in protein networksJuan, David CSIC ORCID ; Pazos, Florencio; Valencia, Alfonsoartículo de revisión
closedAccessaccesoRestringido.pdf.jpg28-abr-2023​Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogsMoon, Katherine L.; Huson, Heather J.; Morrill, Kathleen; Wang, Ming-Shan; Li, Xue; Srikanth, Krishnamoorthy; Zoonomia Consortium; Juan, David CSIC ORCID ; Marqués-Bonet, Tomàs CSIC ORCID ; Muntané, Gerard CSIC ORCID; Navarro, Arcadi CSIC ORCID ; Serres-Armero, Aitor CSIC; Valenzuela, Alejandro CSIC ORCID; Lindblad-Toh, Kerstin; Svenson, Gavin J.; Karlsson, Elinor K.; Shapiro, Bethartículo
openAccesshuman_brain_tissue.pdf.jpg29-mar-2021Comprehensive identification of somatic nucleotide variants in human brain tissueWang, Yifan; Bae, Taejeong; Thorpe, Jeremy; Sherman, Maxwell A.; Jones, Attila G.; Cho, Sean; Daily, Kenneth; Dou, Yanmei; Ganz, Javier; Galor, Alon; Lobón, Irene CSIC ORCID; Pattni, Reenal; Rosenbluh, Chaggai; Tomasi, Simone; Tomasini, Livia; Yang, Xiaoxu; Zhou, Bo; Akbarian, Schahram; Ball, Laurel L.; Bizzotto, Sara; Emery, Sarah B.; Doan, Ryan; Fasching, Liana; Jang, Yeongjun; Juan, David CSIC ORCID ; Lizano, Esther CSIC ORCID; Luquette, Lovelace J.; Moldovan, John B.; Narurkar, Rujuta; Oetjens, Matthew T.; Rodin, Rachel E.; Sekar, Shobana; Shin, Joo Heon; Soriano, Eduardo; Straub, Richard E.; Zhou, Weichen; Chess, Andrew; Gleeson, Joseph G.; Marqués-Bonet, Tomàs CSIC ORCID ; Park, Peter J.; Peters, Mette A.; Pevsner, Jonathan; Walsh, Christopher A.; Weinberger, Daniel R.; Brain Somatic Mosaicism Network; Vaccarino, Flora M.; Moran, John V.; Urban, Alexander E.; Kidd, Jeffrey M.; Mills, Ryan E.; Abyzov, Alexejartículo
openAccessdomestic_dog.pdf.jpgoct-2021Copy number variation underlies complex phenotypes in domestic dog breeds and other canidsSerres-Armero, Aitor CSIC; Davis, Brian W.; Povolotskaya, Inna S. CSIC; Morcillo-Suárez, Carlos CSIC; Plassais, Jocelyn; Juan, David CSIC ORCID ; Ostrander, E. A.; Marqués-Bonet, Tomàs CSIC ORCID artículo
closedAccessaccesoRestringido.pdf.jpgmay-2023Current advances in primate genomics: novel approaches for understanding evolution and diseaseJuan, David CSIC ORCID ; Santpere, Gabriel CSIC ORCID; Kelley, Joanna L.; Cornejo, Omar E.; Marqués-Bonet, Tomàs CSIC ORCID artículo de revisión
openAccessNRG_coev_Juan_2013.pdf.jpgabr-2013Emerging methods in protein co-evolutionJuan, David CSIC ORCID ; Pazos, Florencio; Valencia, Alfonsoartículo
openAccessEnhancing_the_prediction.pdf.jpg23-ene-2008Enhancing the prediction of protein pairings between interacting families using orthology informationGonzález Izarzugaza, José María; Juan, David CSIC ORCID ; Pons, Carles; Pazos, Florencio; Valencia, Alfonsoartículo
openAccessprimate_lymphoblastoid_cell.pdf.jpg25-may-2021Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architecturesGarcía-Pérez, Raquel CSIC ORCID; Esteller-Cucala, Paula; Mas, Glòria; Lobón, Irene CSIC ORCID; Di Carlo, Valerio; Riera, Meritxell; Kuhlwilm, Martin CSIC ORCID; Navarro, Arcadi CSIC ORCID ; Blancher, Antoine; Croce, Luciano di; Gómez-Skarmeta, José Luis CSIC ORCID ; Juan, David CSIC ORCID ; Marqués-Bonet, Tomàs CSIC ORCID artículo
openAccess23-abr-2024Evolutionary analysis of gene ages across TADs associates chromatin topology with whole-genome duplicationsJames, Caelinn; Trevisan-Herraz, Marco; Juan, David CSIC ORCID ; Rico, Daniel CSIC ORCIDartículo
openAccessmicroorganisms-08-01686-v3.pdf.jpg29-oct-2020Expanding the Geographic Characterisation of Epstein¿Barr Virus Variation through Gene-Based ApproachesTelford, Marco CSIC; Hughes, David A. CSIC ORCID; Juan, David CSIC ORCID ; Stoneking, Mark; Navarro, Arcadi CSIC ORCID ; Santpere, Gabriel CSIC ORCIDartículo
openAccesss41467-020-16296-4.pdf.jpg19-may-2020Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviationsHeredia-Genestar, José María CSIC ORCID; Marqués-Bonet, Tomàs CSIC ORCID ; Juan, David CSIC ORCID ; Navarro, Arcadi CSIC ORCID artículo
openAccess7-feb-2020Gene regulatory architectures dissect the evolutionary dynamics of regulatory elements in humans and non-human primatesJuan, David CSIC ORCID ; García-Pérez, Raquel CSIC ORCID; Esteller-Cucala, Paula; Mas, Glòria; Lobón, Irene CSIC ORCID; Di Carlo, Valerio; Riera, Meritxell; Kuhlwilm, Martin CSIC ORCID; Navarro, Arcadi CSIC ORCID ; Blancher, Antoine; Croce, Luciano di; Gómez-Skarmeta, José Luis CSIC ORCID ; Marqués-Bonet, Tomàs CSIC ORCID comunicación de congreso
openAccessGhost_NEE_2023_OA.pdf.jpgsep-2023Ghost admixture in eastern gorillasPawar, Harvinder; Rymbekova, Aigerim; Cuadros-Espinoza, Sebastian; Huang, Xin; Manuel, Marc de CSIC ORCID; van der Valk, Tom; Lobón, Irene CSIC ORCID; Alvarez-Estape, Marina CSIC ORCID; Haber, Marc; Dolgova, Olga; Han, Sojung CSIC ORCID; Esteller-Cucala, Paula; Juan, David CSIC ORCID ; Ayub, Qasim; Bautista, Ruben; Kelley, Joanna L.; Cornejo, Omar E.; Lao, Oscar CSIC ORCID CVN; Andrés, Aida M.; Guschanski, Katerina; Ssebide, Benard; Cranfield, Mike; Tyler-Smith, Chris; Xue, Yali; Prado-Martinez, Javier CSIC ORCID; Marqués-Bonet, Tomàs CSIC ORCID ; Kuhlwilm, Martin CSIC ORCIDartículo
openAccessDavidJuan_2008.pdf.jpg22-ene-2008High-confidence prediction of global interactomes based on genome-wide coevolutionary networksJuan, David CSIC ORCID ; Pazos, Florencio; Valencia, Alfonsoartículo
closedAccessaccesoRestringido.pdf.jpg28-abr-2023Insights into mammalian TE diversity through the curation of 248 genome assembliesOsmanski, Austin B.; Paulat, Nicole S.; Korstian, Jenny; Grimshaw, Jenna R.; Halsey, Michaela; Sullivan, Kevin A. M.; Moreno-Santillán, Diana D.; Crookshanks, Claudia; Roberts, Jacquelyn; Garcia, Carlos; Johnson, Matthew G.; Densmore, Llewellyn D.; Stevens, Richard D.; Zoonomia Consortium; Juan, David CSIC ORCID ; Marqués-Bonet, Tomàs CSIC ORCID ; Muntané, Gerard CSIC ORCID; Navarro, Arcadi CSIC ORCID ; Serres-Armero, Aitor CSIC; Valenzuela, Alejandro CSIC ORCID; Rosen, Jeb; Storer, Jessica M.; Hubley, Robert; Smit, Arian F. A.; Dávalos, Liliana M.; Karlsson, Elinor K.; Lindblad-Toh, Kerstin; Ray, David A.artículo
closedAccessaccesoRestringido.pdf.jpg28-abr-2023Integrating gene annotation with orthology inference at scaleKirilenko, Bogdan M.; Munegowda, Chetan; Osipova, Ekaterina; Jebb, David; Sharma, Virag; Blumer, Moritz; Morales, Ariadna E.; Ahmed, Alexis-Walid; Kontopoulos, Dimitrios-Georgios; Hilgers, Leon; Lindblad-Toh, Kerstin; Karlsson, Elinor K.; Zoonomia Consortium; Juan, David CSIC ORCID ; Marqués-Bonet, Tomàs CSIC ORCID ; Muntané, Gerard CSIC ORCID; Navarro, Arcadi CSIC ORCID ; Serres-Armero, Aitor CSIC; Valenzuela, Alejandro CSIC ORCID; Hiller, Michaelartículo