English   español  
Please use this identifier to cite or link to this item: http://hdl.handle.net/10261/71764
logo share SHARE logo core CORE   Add this article to your Mendeley library MendeleyBASE

Visualizar otros formatos: MARC | Dublin Core | RDF | ORE | MODS | METS | DIDL | DATACITE
Exportar a otros formatos:


Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

AuthorsLogares, Ramiro ; Audic, Stephane; Santini, Sebastien; Pernice, Massimo ; Vargas, Colomban de ; Massana, Ramon
Heterotrophic flagellates
Issue DateApr-2012
PublisherNature Publishing Group
CitationISME Journal - International Society for Microbial Ecology 6: 1823-1833 (2012)
AbstractFlagellated heterotrophic microeukaryotes have key roles for the functioning of marine ecosystems as they channel large amounts of organic carbon to the upper trophic levels and control the population sizes of bacteria and archaea. Still, we know very little on the diversity patterns of most groups constituting this evolutionary heterogeneous assemblage. Here, we investigate 11 groups of uncultured flagellates known as MArine STramenopiles (MASTs). MASTs are ecologically very important and branch at the base of stramenopiles. We explored the diversity patterns of MASTs using pyrosequencing (18S rDNA) in coastal European waters. We found that MAST groups range from highly to lowly diversified. Pyrosequencing (hereafter ‘454’) allowed us to approach to the limits of taxonomic diversity for all MAST groups, which varied in one order of magnitude (tens to hundreds) in terms of operational taxonomic units (98% similarity). We did not evidence large differences in activity, as indicated by ratios of DNA:RNA-reads. Most groups were strictly planktonic, although we found some groups that were active in sediments and even in anoxic waters. The proportion of reads per size fraction indicated that most groups were composed of very small cells (~2–5 μm). In addition, phylogenetically different assemblages appeared to be present in different size fractions, depths and geographic zones. Thus, MAST diversity seems to be highly partitioned in spatial scales. Altogether, our results shed light on these ecologically very important but poorly known groups of uncultured marine flagellates
Description11 pages, 7 figures, 2 tables
Publisher version (URL)https://doi.org/10.1038/ismej.2012.36
Appears in Collections:(ICM) Artículos
Files in This Item:
File Description SizeFormat 
Logares_et_al_2012_postprint.pdf375,94 kBAdobe PDFThumbnail
Show full item record
Review this work

WARNING: Items in Digital.CSIC are protected by copyright, with all rights reserved, unless otherwise indicated.