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A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature

AuthorsGonzález Grau, Juan Miguel ; Sáiz-Jiménez, Cesáreo
Issue Date2002
PublisherBlackwell Publishing
CitationEnvironmental Microbiology 4(11): 770-773 (2002)
AbstractG+C mol% content in microorganisms is one of the recommended characteristics for the standard description of bacterial species. In this study we present a novel fluorimetric method to estimate the G+C mol% content in microorganisms. Double-stranded DNA was specifically stained with SYBR Green I, and its thermal denaturalization was followed by measuring a decrease in fluorescence using a real-time PCR thermocycler. Unlike most previous determinations of G+C mol%, in this study only DNA from microorganisms with an available completely sequenced genome were used to prepare the calibration curves. Calibration curves showed a linear relationship between G+C mol% content and melting temperature and they were performed both in the absence and presence of 30% formamide. This protocol proves to be a rapid and inexpensive method to estimate DNA base ratios of novel microorganisms.
Description4 pages, 1 figure, 1 table, 17 references.
Publisher version (URL)http://dx.doi.org/10.1046/j.1462-2920.2002.00362.x
Appears in Collections:(IRNAS) Artículos
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