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Title

GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs

AuthorsRisueño, A.; Fontanillo, Celia ; Dinger, Marcel E.; De Las Rivas, Javier
Issue Date29-Apr-2010
PublisherBioMed Central
CitationBMC Bioinformatics 11: 221 (2010)
AbstractGenome-wide expression studies have developed exponentially in recent years as a result of extensive use of microarray technology. However, expression signals are typically calculated using the assignment of "probesets" to genes, without addressing the problem of "gene" definition or proper consideration of the location of the measuring probes in the context of the currently known genomes and transcriptomes. Moreover, as our knowledge of metazoan genomes improves, the number of both protein-coding and noncoding genes, as well as their associated isoforms, continues to increase. Consequently, there is a need for new databases that combine genomic and transcriptomic information and provide updated mapping of expression probes to current genomic annotations.
DescriptionThis is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.
Publisher version (URL)http://dx.doi.org/doi:10.1186/1471-2105-11-221
URIhttp://hdl.handle.net/10261/45814
DOIdoi:10.1186/1471-2105-11-221
ISSN1471-2105
E-ISSN1471-2105
Appears in Collections:(IBMCC) Artículos
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