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Título: | Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology |
Autor: | Recuerda, María CSIC ORCID; Vizueta, Joel; Cuevas-Caballé, Cristian; Blanco, Guillermo CSIC ORCID ; Rozas, Julio; Milá, Borja CSIC ORCID | Palabras clave: | Common chaffinch Fringilla coelebs Reference genome Whole genome assembly |
Fecha de publicación: | abr-2021 | Editor: | Oxford University Press | Citación: | Genome biology and evolution 13(4): 1-6 (2021) | Resumen: | The common chaffinch, Fringilla coelebs, is one of the most common, widespread, and well-studied passerines in Europe, with a broad distribution encompassingWestern Europe and parts ofAsia,NorthAfrica, and theMacaronesian archipelagos.We present a high-quality genome assemblyof the commonchaffinchgeneratedusing Illumina shotgunsequencing incombination with Chicago and Hi-C libraries. The final genome is a 994.87-Mb chromosome-level assembly, with 98% of the sequence data located in chromosome scaffolds and a N50 statistic of 69.73Mb. Our genome assembly shows high completeness, with a complete BUSCO score of 93.9% using the avian data set. Around 7.8% of the genome contains interspersed repetitive elements. The structural annotation yielded 17,703 genes, 86.5% of which have a functional annotation, including 7,827 complete universal single-copy orthologs out of 8,338 genes represented in the BUSCO avian data set. This newannotated genome assemblywill be a valuable resource as a reference for comparative and population genomic analyses of passerine, avian, and vertebrate evolution. | Versión del editor: | https://academic.oup.com/gbe/article/13/4/evab034/6146356 | URI: | http://hdl.handle.net/10261/240245 | DOI: | 10.1093/gbe/evab034 | E-ISSN: | 1759-6653 |
Aparece en las colecciones: | (MNCN) Artículos |
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Milá_B_Chromosome.pdf | Artículo principal | 613,82 kB | Adobe PDF | Visualizar/Abrir |
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