Please use this identifier to cite or link to this item: http://hdl.handle.net/10261/191606
Share/Export:
logo share SHARE logo core CORE BASE
Visualizar otros formatos: MARC | Dublin Core | RDF | ORE | MODS | METS | DIDL | DATACITE
Title

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

AuthorsAlioto, Tyler S.; Alexiou, Konstantinos G.; Bardil, Amélie; Barteri, Fabio; Castanera, Raúl; Cruz, Fernando CSIC ORCID; Dhingra, Amit; Duval, Henri; Fernández i Martí, Ángel; Frías, Leonor; Galán, Beatriz CSIC ORCID ; García, José Luis CSIC ORCID ; Howad, Werner CSIC ORCID; Gómez-Garrido, Jèssica; Gut, Marta; Julca, Irene; Morata, Jordi; Puigdomènech, Pere CSIC; Ribeca, Paolo; Rubio-Cabetas, María José; Vlasova, Anna; Wirthensohn, Michelle G.; García-Mas, Jordi CSIC ORCID; Gabaldón, Toni; Casacuberta, Josep M. CSIC ORCID; Arús, Pere CSIC ORCID
KeywordsAlmonds
Variability
Indels
Transposable elements
Crop evolution
Prunus
Rosaceous crops
Issue Date2020
PublisherJohn Wiley & Sons
CitationPlant Journal 101(2) 455-472 (2020)
AbstractWe sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long-read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated 238 Mb almond genome size, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27,969 protein-coding genes and 6,747 non-coding transcripts. By phylogenomic comparison with the genomes of 16 additional close and distant species we estimated that almond and peach (P. persica) diverged around 5.88 Mya. These two genomes are highly syntenic and show a high degree of sequence conservation (20 nucleotide substitutions/kb). However, they also exhibit a high number of presence/absence variants, many attributable to the movement of transposable elements (TEs). TEs have generated an important number of presence/absence variants between almond and peach, and we show that the recent history of TE movement seems markedly different between them. TEs may also be at the origin of important phenotypic differences between both species, and in particular, for the sweet kernel phenotype, a key agronomic and domestication character for almond. Here we show that in sweet almond cultivars, highly methylated TE insertions surround a gene involved in the biosynthesis of amygdalin, whose reduced expression has been correlated with the sweet almond phenotype. Altogether, our results suggest a key role of TEs in the recent history and diversification of almond and its close relative peach.
Publisher version (URL)https://doi.org/10.1111/tpj.14538
URIhttp://hdl.handle.net/10261/191606
DOI10.1111/tpj.14538
ISSN0960-7412
E-ISSN1365-313X
Appears in Collections:(CIB) Artículos
(CRAG) Artículos

Files in This Item:
File Description SizeFormat
transposequenc.pdf998,62 kBAdobe PDFThumbnail
View/Open
Show full item record
Review this work

PubMed Central
Citations

18
checked on Dec 6, 2021

SCOPUSTM   
Citations

23
checked on Nov 30, 2021

WEB OF SCIENCETM
Citations

22
checked on Dec 1, 2021

Google ScholarTM

Check

Altmetric

Dimensions


Related articles:


WARNING: Items in Digital.CSIC are protected by copyright, with all rights reserved, unless otherwise indicated.