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Título

Bayesian-Maximum-Entropy Reweighting of IDP Ensembles Based on NMR Chemical Shifts

AutorCrehuet, Ramón CSIC ORCID ; Buigues, Pedro J.; Salvatella, Xavier; Lindorff-Larsen, Kresten
Palabras claveBayesian methods
Maximum entropy
Intrinsically disordered proteins
Protein ensembles
Structural modelling
NMR
Molecular dynamics
Chemical shifts
Fecha de publicación17-sep-2019
EditorMolecular Diversity Preservation International
CitaciónEntropy 21(9): 898 (2019)
ResumenBayesian and Maximum Entropy approaches allow for a statistically sound and systematic fitting of experimental and computational data. Unfortunately, assessing the relative confidence in these two types of data remains difficult as several steps add unknown error. Here we propose the use of a validation-set method to determine the balance, and thus the amount of fitting. We apply the method to synthetic NMR chemical shift data of an intrinsically disordered protein. We show that the method gives consistent results even when other methods to assess the amount of fitting cannot be applied. Finally, we also describe how the errors in the chemical shift predictor can lead to an incorrect fitting and how using secondary chemical shifts could alleviate this problem.
Versión del editorhttps://doi.org/10.3390/e21090898
URIhttp://hdl.handle.net/10261/191181
DOI10.3390/e21090898
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