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dc.contributor.authorBerlanas, Carmenes_ES
dc.contributor.authorBerbegal, Mónicaes_ES
dc.contributor.authorElena, Georginaes_ES
dc.contributor.authorLaidani, Meriemes_ES
dc.contributor.authorCibriaín Sabalza, José Félixes_ES
dc.contributor.authorSagüés Sarasa, Anaes_ES
dc.contributor.authorGramaje, Davides_ES
dc.date.accessioned2019-08-06T07:22:23Z-
dc.date.available2019-08-06T07:22:23Z-
dc.date.issued2019-05-22-
dc.identifier.citationFrontiers in Microbiology 10: 1142 (2019)es_ES
dc.identifier.issn1664-302X-
dc.identifier.urihttp://hdl.handle.net/10261/187665-
dc.description.abstractThe microbiota colonizing the rhizosphere and the endorhizosphere contribute to plant growth, productivity, carbon sequestration, and phytoremediation. Several studies suggested that different plants types and even genotypes of the same plant species harbor partially different microbiomes. Here, we characterize the rhizosphere bacterial and fungal microbiota across five grapevine rootstock genotypes cultivated in the same soil at two vineyards and sampling dates over 2 years by 16S rRNA gene and ITS high-throughput amplicon sequencing. In addition, we use quantitative PCR (qPCR) approach to measure the relative abundance and dynamic changes of fungal pathogens associated with black-foot disease. The objectives were to (1) unravel the effects of rootstock genotype on microbial communities in the rhizosphere of grapevine and (2) to compare the relative abundances of sequence reads and DNA amount of black-foot disease pathogens. Host genetic control of the microbiome was evident in the rhizosphere of the mature vineyard. Microbiome composition also shifted as year of sampling, and fungal diversity varied with sampling moments. Linear discriminant analysis identified specific bacterial (i.e., Bacillus) and fungal (i.e., Glomus) taxa associated with grapevine rootstocks. Host genotype did not predict any summary metrics of rhizosphere α- and β-diversity in the young vineyard. Regarding black-foot associated pathogens, a significant correlation between sequencing reads and qPCR was observed. In conclusion, grapevine rootstock genotypes in the mature vineyard were associated with different rhizosphere microbiomes. The latter could also have been affected by age of the vineyard, soil properties or field management practices. A more comprehensive study is needed to decipher the cause of the rootstock microbiome selection and the mechanisms by which grapevines are able to shape their associated microbial community. Understanding the vast diversity of bacteria and fungi in the rhizosphere and the interactions between microbiota and grapevine will facilitate the development of future strategies for grapevine protection.es_ES
dc.description.sponsorshipThe research was financially supported by The National Institute for Agricultural and Food Research and Technologyes_ES
dc.language.isoenges_ES
dc.publisherFrontiers Mediaes_ES
dc.relation.isversionofPublisher's versiones_ES
dc.rightsopenAccesses_ES
dc.subjectBacterial and fungal recruitmentes_ES
dc.subjectBlack-foot diseasees_ES
dc.subjectMicrobial ecologyes_ES
dc.subjectMicrobiomees_ES
dc.subjectRhizospherees_ES
dc.subjectRootstock selectiones_ES
dc.titleThe Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyardses_ES
dc.typeartículoes_ES
dc.identifier.doi10.3389/fmicb.2019.01142-
dc.description.peerreviewedPeer reviewedes_ES
dc.relation.publisherversionhttps://doi.org/10.3389/fmicb.2019.01142es_ES
dc.identifier.e-issn1664-302X-
dc.rights.licensehttps://creativecommons.org/licenses/by/4.0/es_ES
dc.contributor.funderCSIC - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)es_ES
dc.relation.csices_ES
oprm.item.hasRevisionno ko 0 false*
dc.identifier.funderhttp://dx.doi.org/10.13039/100007652es_ES
dc.identifier.pmid31178845-
local.message.claim2023-12-28T10:01:38.887+0100|||rp15245|||submit_approve|||dc_contributor_author|||None*
dc.type.coarhttp://purl.org/coar/resource_type/c_6501es_ES
item.openairetypeartículo-
item.cerifentitytypePublications-
item.languageiso639-1en-
item.grantfulltextopen-
item.openairecristypehttp://purl.org/coar/resource_type/c_18cf-
item.fulltextWith Fulltext-
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