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http://hdl.handle.net/10261/182958
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dc.contributor.author | Korf, Imke H. E. | - |
dc.contributor.author | Meier-Kolthoff, Jan P. | - |
dc.contributor.author | Adriaenssens, Evelien M. | - |
dc.contributor.author | Kropinski, Andrew M. | - |
dc.contributor.author | Nimtz, Manfred | - |
dc.contributor.author | Rohde, Manfred | - |
dc.contributor.author | van Raaij, Mark J. | - |
dc.contributor.author | Wittmann, Johannes | - |
dc.date.accessioned | 2019-05-31T06:04:36Z | - |
dc.date.available | 2019-05-31T06:04:36Z | - |
dc.date.issued | 2019-05-17 | - |
dc.identifier.citation | Viruses 11(5): 454 (2019) | - |
dc.identifier.issn | 1999-4915 | - |
dc.identifier.uri | http://hdl.handle.net/10261/182958 | - |
dc.description | © The Author(s). | - |
dc.description.abstract | The aim of this study was to gain further insight into the diversity of Escherichia coli phages followed by enhanced work on taxonomic issues in that field. Therefore, we present the genomic characterization and taxonomic classification of 50 bacteriophages against E. coli isolated from various sources, such as manure or sewage. All phages were examined for their host range on a set of different E. coli strains, originating, e.g., from human diagnostic laboratories or poultry farms. Transmission electron microscopy revealed a diversity of morphotypes (70% Myo-, 22% Sipho-, and 8% Podoviruses), and genome sequencing resulted in genomes sizes from ~44 to ~370 kb. Annotation and comparison with databases showed similarities in particular to T4- and T5-like phages, but also to less-known groups. Though various phages against E. coli are already described in literature and databases, we still isolated phages that showed no or only few similarities to other phages, namely phages Goslar, PTXU04, and KWBSE43-6. Genome-based phylogeny and classification of the newly isolated phages using VICTOR resulted in the proposal of new genera and led to an enhanced taxonomic classification of E. coli phages | - |
dc.description.sponsorship | E.M.A. gratefully acknowledges the support of the Biotechnology and Biological Sciences Research Council Institute Strategic Programme Gut Microbes and Health (BB/R012490/1) and its constituent project BBS/E/F/000PR10353. I.H.E.K. was supported by the German Federal Environmental Foundation (DBU, AZ 32726/01). J.P.M. was supported by Deutsche Forschungsgemeinschaft within “Sonderforschungsbereich TRR 51”. M.J.v.R. is funded by grant BFU2017-82207-P from the Spanish Ministry of Science, Innovation and Universities, State Agency of Research, co-financed by the European Regional Development Fund of the European Union. | - |
dc.publisher | Multidisciplinary Digital Publishing Institute | - |
dc.relation | info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/BFU2017-82207-P | - |
dc.relation | BFU2017-82207-P/AEI/10.13039/501100011033 | - |
dc.relation.isversionof | Publisher's version | - |
dc.rights | openAccess | - |
dc.subject | Bacteriophage | - |
dc.subject | Escherichia coli | - |
dc.subject | Taxonomy | - |
dc.subject | Diversity | - |
dc.subject | Genomics | - |
dc.title | Still something to discover: novel insights into Escherichia coli phage diversity and taxonomy | - |
dc.type | artículo | - |
dc.identifier.doi | 10.3390/v11050454 | - |
dc.description.peerreviewed | Peer reviewed | - |
dc.relation.publisherversion | https://doi.org/10.3390/v11050454 | - |
dc.identifier.e-issn | 1999-4915 | - |
dc.date.updated | 2019-05-31T06:04:36Z | - |
dc.rights.license | http://creativecommons.org/licenses/by/4.0/ | - |
dc.contributor.funder | Agencia Estatal de Investigación (España) | - |
dc.contributor.funder | German Federal Environmental Foundation | - |
dc.contributor.funder | Ministerio de Ciencia, Innovación y Universidades (España) | - |
dc.contributor.funder | European Commission | - |
dc.relation.csic | Sí | - |
dc.identifier.funder | http://dx.doi.org/10.13039/100007636 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100000780 | es_ES |
dc.identifier.funder | http://dx.doi.org/10.13039/501100011033 | es_ES |
dc.identifier.pmid | 31109012 | - |
dc.type.coar | http://purl.org/coar/resource_type/c_6501 | es_ES |
item.openairetype | artículo | - |
item.grantfulltext | open | - |
item.cerifentitytype | Publications | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.fulltext | With Fulltext | - |
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Still_Korf_Art2019.pdf | 25,66 MB | Adobe PDF | Visualizar/Abrir |
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