Elements of the heterocyst-specific transcriptome unraveled by co-expression analysis in Nostoc sp. PCC 7120 [Dataset]

Brenes-Álvarez, Manuel; Mitschke, Jan; Olmedo-Verd, Elvira; Georg, Jens; Hess, Wolfgang R.; Vioque, Agustín; Muro-Pastor, Alicia M.

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Brenes-Álvarez, M., Mitschke, J., Olmedo-Verd, E., Georg, J., Hess, W. R., Vioque, A., & Muro-Pastor, A. M. (2019). Elements of the heterocyst-specific transcriptome unraveled by co-expression analysis in Nostoc sp. PCC 7120 [Dataset] [Data set]. Digital.CSIC. http://doi.org/10.20350/DIGITALCSIC/8631

Título:	Elements of the heterocyst-specific transcriptome unraveled by co-expression analysis in Nostoc sp. PCC 7120 [Dataset]
Autor:	Brenes-Álvarez, Manuel CSIC ORCID; Mitschke, Jan; Olmedo-Verd, Elvira CSIC ORCID ; Georg, Jens; Hess, Wolfgang R.; Vioque, Agustín CSIC ORCID; Muro-Pastor, Alicia M. CSIC ORCID
Fecha de publicación:	2019
Citación:	Manuel Brenes-Álvarez, Jan Mitschke, Elvira Olmedo-Verd, Jens Georg, Wolfgang R. Hess, Agustín Vioque and Alicia M. Muro-Pastor. 2019. Elements of the heterocyst-specific transcriptome unraveled by co-expression analysis in Nostoc sp. PCC 7120 [Dataset], DIGITAL.CSIC, http://dx.doi.org/10.20350/digitalCSIC/8631
Descripción:	Supplementary data file 1 “genomeplot_WT_hetR_-N_chromosome.pdf”. Overview (chromosome) combining log2-normalized expression values (left y axis) from the microarray analysis of cultures of wild type and hetR strain subjected to nitrogen deprivation for 0-6-12-24 hours as indicated by coloured lines, with the reads numbers from the RNA-Seq dataset in (Mitschke, J., Vioque, A., Haas, F., Hess, W.R., and Muro-Pastor, A.M. (2011). Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc. Natl. Acad. Sci. USA 108, 20130-20135) (right y axis). Supplementary data file 2 “genomeplot_WT_hetR_-N_plasmids.pdf”. Overview (six plasmids combined) combining log2-normalized expression values (left y axis) from the microarray analysis of cultures of wild type and hetR strain subjected to nitrogen deprivation for 0-6-12-24 hours as indicated by coloured lines, with the reads numbers from the RNA-Seq dataset in (Mitschke, J., Vioque, A., Haas, F., Hess, W.R., and Muro-Pastor, A.M. (2011). Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc. Natl. Acad. Sci. USA 108, 20130-20135) (right y axis). Supplementary data file 3 “genomeplot_WT_+N_-N_chromosome.pdf”. Overview (chromosome) combining log2-normalized expression values (left y axis) from the microarray analysis of cultures of wild type at 0 and 8 h after nitrogen depletion and at 0 and 8 h after NH4 addition as indicated by coloured lines, with the reads numbers from the RNA-Seq dataset in (Mitschke, J., Vioque, A., Haas, F., Hess, W.R., and Muro-Pastor, A.M. (2011). Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc. Natl. Acad. Sci. USA 108, 20130-20135) (right y axis). Supplementary data file 4 “genomeplot_WT_+N_-N_plasmids.pdf”. Overview (six plasmids combined) combining log2-normalized expression values (left y axis) from the microarray analysis of cultures of wild type at 0 and 8 h after nitrogen depletion and at 0 and 8 h after NH4 addition as indicated by coloured lines, with the reads numbers from the RNA-Seq dataset in (Mitschke, J., Vioque, A., Haas, F., Hess, W.R., and Muro-Pastor, A.M. (2011). Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc. Natl. Acad. Sci. USA 108, 20130-20135) (right y axis). Supplementary data file 5 “Co-expression network”. Cytoscape (www.cytoscape.org) file corresponding to the co-expression network constructed.
URI:	http://hdl.handle.net/10261/179430
DOI:	10.20350/digitalCSIC/8631
Aparece en las colecciones:	(IBVF) Conjuntos de datos

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Fichero	Tamaño	Formato
Data_file_1_genomeplot_WT_hetR_-N_chromosome.pdf	128,76 MB	Adobe PDF	Visualizar/Abrir
Data_file_2_genomeplot_WT_hetR_-N_plasmids.pdf	15,21 MB	Adobe PDF	Visualizar/Abrir
Data_file_3_genomeplot_WT_+N_-N_chromosome.pdf	126,84 MB	Adobe PDF	Visualizar/Abrir
Data_file_4_genomeplot_WT_+N_-N_plasmids.pdf	14,5 MB	Adobe PDF	Visualizar/Abrir
Data_file_5_Co-expression_network.cys	10,14 MB	Unknown	Visualizar/Abrir