Please use this identifier to cite or link to this item: http://hdl.handle.net/10261/167848
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dc.contributor.authorPérez-Moreno, Jorge L.es_ES
dc.contributor.authorDeLeo, Danielle M.es_ES
dc.contributor.authorPalero, Ferranes_ES
dc.contributor.authorBracken-Grissom, Heather D.es_ES
dc.date.accessioned2018-07-24T08:49:25Z-
dc.date.available2018-07-24T08:49:25Z-
dc.date.issued2018-
dc.identifier.citationHydrobiologia : doi:10.1007/s10750-018-3678-9 (2018)es_ES
dc.identifier.issn0018-8158-
dc.identifier.urihttp://hdl.handle.net/10261/167848-
dc.descriptionEste artículo contiene 17 páginas, 5 figuras, 5 tablas.es_ES
dc.description.abstractA major goal of evolutionary biology is to understand the role of adaptive processes on sensory systems. Visual capabilities are strongly influenced by environmental and ecological conditions, and the evolutionary advantages of vision are manifest by its complexity and ubiquity throughout Metazoa. Crustaceans occupy a vast array of habitats and ecological niches, and are thus ideal taxa to investigate the evolution of visual systems. A comparative approach is taken here for efficient identification and classification of opsin genes, photoreceptive pigment proteins involved in color vision, focusing on two crustacean model organisms: Hyalella azteca and Daphnia pulex. Transcriptomes of both species were assembled de novo to elucidate the diversity and function of expressed opsins within a robust phylogenetic context. For this purpose, we developed a modified version of the Phylogenetically Informed Annotation tool’s pipeline to filter and identify visual genes from transcriptomes in a scalable and efficient manner. In addition, reference genomes of these species were used to validate our pipeline while characterizing the genomic architecture of the opsin genes. Next-generation sequencing and phylogenetics provide future venues for the study of sensory systems, adaptation, and evolution in model and nonmodel organisms.es_ES
dc.description.sponsorshipThis work was partially funded by two grants awarded from the National Science Foundation: Doctoral Dissertation Improvement Grant (#1701835) awarded to JPM and HBG, and the Division of Environmental Biology Bioluminescence and Vision grant (DEB-1556059) awarded to HBG. FP acknowledges project CHALLENGEN (CTM2013-48163) of the Spanish Government and a postdoctoral contract funded by the Beatriu de Pinos Programme of the Generalitat de Catalunya (2014-BPB-00038). The authors would like to thank the Instructional & Research Computing Center (IRCC) at Florida International University for providing High-Performance Computing resources that have contributed to the research results reported within this article. This is contribution #92 of the Marine Education and Research Center of the Institute for the Water and the Environment at the Florida International University.es_ES
dc.language.isoenges_ES
dc.publisherSpringeres_ES
dc.relation.isversionofPrePrint-
dc.rightsopenAccesses_ES
dc.subjectTranscriptomicses_ES
dc.subjectVisiones_ES
dc.subjectEvolutiones_ES
dc.subjectPhototransductiones_ES
dc.subjectProteines_ES
dc.subjectRNAseqes_ES
dc.titlePhylogenetic annotation and genomic architecture of opsin genes in Crustaceaes_ES
dc.typeartículoes_ES
dc.description.peerreviewedPeer reviewedes_ES
dc.relation.publisherversionhttps://doi.org/10.1007/s10750-018-3678-9es_ES
dc.relation.csices_ES
oprm.item.hasRevisionno ko 0 false*
dc.type.coarhttp://purl.org/coar/resource_type/c_6501es_ES
item.grantfulltextopen-
item.openairecristypehttp://purl.org/coar/resource_type/c_18cf-
item.cerifentitytypePublications-
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item.languageiso639-1en-
item.openairetypeartículo-
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