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openAccessCommunity_perspective_OA_2021.pdf.jpg2021A community perspective on the concept of marine holobionts: current status, challenges, and future directionsDittami, Simon M.; Arboleda, Enrique; Auguet, Jean-Christophe CSIC ORCID; Brigalke, Arite; Briand, Enora; Cárdenas, Paco; Cardini, Ulisse; Decelle, Johan; Engelen, Aschwin H.; Eveillard, Damien; Gachon, Claire M. M.; Griffiths, Sarah M.; Harder, Tilmann; Kayal, Ehsan; Kazamia, Elena; Lallier, François H.; Medina, Mónica; Marzinelli, Ezequiel M.; Morganti, Teresa Maria; Núñez Pons, Laura; Prado, Soizic; Pintado, José CSIC ORCID; Saha, M.; Selosse, Marc-André; Skillings, Derek; Stock, Willem; Sunagawa, Shinichi; Toulza, Eve; Vorobev, Alexey; Leblanc, Catherine; Not, Fabrice CSIC ORCIDartículo
openAccessPaoli_et_al_2022.pdf.jpgJun-2022Biosynthetic potential of the global ocean microbiomePaoli, Lucas; Ruscheweyh, Hans-Joachim; Forneris, Clarissa C.; Hubrich, Florian; Kautsar, Satria; Bhushan, Agneya; Lotti, Alessandro; Clayssen, Quentin; Salazar, Guillem CSIC ORCID; Milanese, Alessio; Carlström, Charlotte I.; Papadopoulou, Chrysa; Gehrig, Daniel; Karasikov, Mikhaill; Mustafa, Harun; Larralde, Martin; Carroll, Laura M.; Sánchez Fernández, Pablo CSIC ORCID ; Zayed, Ahmed A.; Cronin, Dylan R.; Acinas, Silvia G. CSIC ORCID ; Bork, Peer; Bowler, Chris; Delmont, Tom O.; Gasol, Josep M. CSIC ORCID ; Gossert, Alvar D.; Kahles, André; Sullivan, Matthew B.; Wincker, Patrick; Zeller, Georg; Robinson, Serina L.; Piel, Jörn; Sunagawa, Shinichiartículo
openAccessCaputi_et_al_2019.pdf.jpgJan-2019Community‐Level Responses to Iron Availability in Open Ocean Plankton EcosystemsCaputi, Luigi; Carradec, Quentin; Eveillard, Damien; Kirilovsky, Amos; Pelletier, Eric; Pierella Karlusich, Juan J.; Rocha Jimenez Vieira, Fabio; Villar, Emilie; Chaffron, Samuel; Malviya, Shruti; Scalco, Eleonora; Acinas, Silvia G. CSIC ORCID ; Alberti, Adriana; Aury, Jean‐Marc; Benoiston, Anne‐Sophie; Bertrand, Alexis; Biard, Tristan; Bittner, Lucie; Boccara, Martine; Brum, Jennifer R.; Brunet, Christophe; Busseni, Greta; Carratalà, Anna; Claustre, Hervé; Coelho, Luis Pedro; Colin, Sebastien; D'Aniello, Salvatore; Da Silva, Corinne; Del Core, Marianna; Doré, Hugo; Gasparini, Stéphane; Kokoszka, Florian; Jamet, Jean‐Louis; Lejeusne, Christophe CSIC ORCID; Lepoivre, Cyrille; Lescot, Magali; Lima-Mendez, Gipsi; Lombard, Fabien; Lukeš, Julius; Maillet, Nicolas; Madoui, Mohammed‐Amin; Martinez, Elodie; Mazzocchi, M. G.; Néou, Mario B.; Paz‐Yepes, Javier; Poulain, Julie; Ramondenc, Simon; Romagnan, Jean-Baptiste; Roux, Simon; Salvagio Manta, Daniela; Sanges, R.; Speich, Sabrina; Sprovieri, M.; Sunagawa, Shinichi; Taillandier, Vincent; Tanaka, Atsuko; Tirichine, Leila; Trottier, Camille; Uitz, Julia; Veluchamy, Alaguraj; Veselá, Jana; Vincent, Flora; Yau, Sheree CSIC ORCID ; Kandels‐Lewis, Stefanie; Searson, Sarah; Dimier, Céline; Picheral, Marc; Bork, Peer; Boss, Emmanuel; Vargas, Colomban de; Follows, Michael J.; Grimsley, Nigel; Hingamp, Pascal; Karsenti, Eric; Sordino, Paolo; Stemmann, Lars; Sullivan, Matthew B.; Tagliabue, Alessandro; Zingone, Adriana; Garczarek, Laurence; D'Ortenzio, Fabrizio; Testor, Pierre; Not, Fabrice CSIC ORCID; Ribera d’Alcalà, Maurizio; Wincker, Patrick; Bowler, Chris; Guidi, Lionel; Iudicone, Danieleartículo
openAccessRoyo_et_al_2021_postprint.pdf.jpgNov-2021Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic OceanRoyo-Llonch, Marta CSIC ORCID ; Sánchez Fernández, Pablo CSIC ORCID ; Ruiz-González, Clara CSIC ORCID ; Salazar, Guillem CSIC ORCID; Pedrós-Alió, Carlos CSIC ORCID; Sebastián, Marta CSIC ORCID; Labadie, Karine; Paoli, Lucas; Ibarbalz, Federico M.; Zinger, Lucie; Churcheward, Benjamin; Tara Oceans Coordinators; Chaffron, Samuel; Eveillard, Damien; Karsenti, Eric; Sunagawa, Shinichi; Wincker, Patrick; Karp-Boss, Lee; Bowler, Chris; Acinas, Silvia G. CSIC ORCID artículo
openAccess11-Feb-2021Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systemsRichter, Daniel J. CSIC ORCID ; Watteaux, Romain; Vannier, Thomas; Leconte, Jade; Frémont, Paul; Reygondeau, Gabriel; Maillet, Nicolas; Henry, Nicolas; Benoit, Gaëtan; da Silva, Ophélie; Delmont, Tom O.; Fernández-Guerra, Antonio; Suweis, Samir; Narci, Romain; Berney, Cedric; Eveillard, Damien; Gavory, Frederick; Guidi, Lionel; Labadie, Karine; Mahieu, Eric; Poulain, Julie; Romac, Sarah; Roux, Simon; Dimier, Céline; Kandels‐Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Oceans, Tara; Pesant, Stéphane; Aury, Jean‐Marc; Brum, Jennifer R.; Lemaitre, Claire; Pelletier, Eric; Bork, Peer; Sunagawa, Shinichi; Lombard, Fabien; Karp-Boss, Lee; Bowler, Chris; Sullivan, Matthew B.; Karsenti, Eric; Mariadassou, Mahendra; Probert, Ian; Peterlongo, Pierre; Wincker, Patrick; Vargas, Colomban de; Ribera d’Alcalà, Maurizio; Iudicone, Daniele; Jaillon, Olivier; Tara Oceans Coordinatorsdataset
openAccessAcinas_et_al_2021.pdf.jpgMay-2021Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communitiesAcinas, Silvia G. CSIC ORCID ; Sánchez Fernández, Pablo CSIC ORCID ; Salazar, Guillem CSIC ORCID; Cornejo-Castillo, Francisco M. CSIC ORCID; Sebastián, Marta CSIC ORCID; Logares, Ramiro CSIC ORCID ; Royo-Llonch, Marta CSIC ORCID ; Paoli, Lucas; Sunagawa, Shinichi; Hingamp, Pascal; Ogata, Hiroyuki; Lima-Mendez, Gipsi; Roux, Simon; González, José M.; Arrieta López de Uralde, Jesús M. CSIC ORCID ; Alam, Intikhab; Kamau, Allan A.; Bowler, Chris; Raes, Jeroen; Pesant, Stéphane; Bork, Peer; Agustí, Susana CSIC ORCID; Gojobori, Takashi; Vaqué, Dolors CSIC ORCID ; Sullivan, Matthew B.; Pedrós-Alió, Carlos CSIC ORCID; Massana, Ramon CSIC ORCID ; Duarte, Carlos M. CSIC ORCID; Gasol, Josep M. CSIC ORCID artículo
openAccessDisentangling_the_impact_of.pdf.jpg1-May-2020Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversityMaistrenko, Oleksandr M.; Mende, Daniel R.; Luetge, Mechthild; Hildebrand, Falk; Schmidt, Thomas Sebastian; Li, Simone S.; Rodrigues, Joao Frederico Matias; von Mering, Christian; Coelho, Luis Pedro; Huerta-Cepas, Jaime; Sunagawa, Shinichi; Bork, Peerartículo
openAccess8-Feb-2024Functional and evolutionary significance of unknown genes from uncultivated taxaRodríguez, Alvaro; Giner-Lamia, Joaquín CSIC ORCID; Cantalapiedra, Carlos P; Botas, Jorge; Deng, Ziqi; Hernández-Plaza, Ana; Munar-Palmer, Martí; Santamaría-Hernando, Saray CSIC ORCID; Rodríguez-Herva, José J. CSIC ORCID; Ruscheweyh, Hans-Joachim; Paoli, Lucas; Schmidt, Thomas Sebastian; Sunagawa, Shinichi; Bork, Peer; López-Solanilla, Emilia; Coelho, Luis Pedro; Huerta-Cepas, Jaimeartículo
openAccessSalazar_et_al_2019.pdf.jpgNov-2019Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean MetatranscriptomeSalazar, Guillem CSIC ORCID; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta CSIC ORCID ; Roux, Simon; Sánchez Fernández, Pablo CSIC ORCID ; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Ferland, Joannie; Kandels‐Lewis, Stefanie; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Acinas, Silvia G. CSIC ORCID ; Babin, Marcel; Bork, Peer; Bowler, Chris; Vargas, Colomban de; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Karp-Boss, Lee; Karsenti, Eric; Ogata, Hiroyuki; Pesant, Stéphane; Speich, Sabrina; Sullivan, Matthew B.; Wincker, Patrick; Sunagawa, Shinichiartículo
openAccessGenomic_evidence_for_global_ocean.pdf.jpg3-Aug-2022Genomic evidence for global ocean plankton biogeography shaped by large-scale current systemsRichter, Daniel J. CSIC ORCID ; Watteaux, Romain; Vannier, Thomas; Leconte, Jade; Frémont, Paul; Reygondeau, Gabriel; Maillet, Nicolas; Henry, Nicolas; Benoit, Gaëtan; da Silva, Ophélie; Delmont, Tom O.; Fernández-Guerra, Antonio; Suweis, Samir; Narci, Romain; Berney, Cedric; Eveillard, Damien; Gavory, Frederick; Guidi, Lionel; Labadie, Karine; Mahieu, Eric; Poulain, Julie; Romac, Sarah; Roux, Simon; Dimier, Céline; Kandels‐Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Oceans, Tara; Pesant, Stéphane; Aury, Jean‐Marc; Brum, Jennifer R.; Lemaitre, Claire; Pelletier, Eric; Bork, Peer; Sunagawa, Shinichi; Lombard, Fabien; Karp-Boss, Lee; Bowler, Chris; Sullivan, Matthew B.; Karsenti, Eric; Mariadassou, Mahendra; Probert, Ian; Peterlongo, Pierre; Wincker, Patrick; Vargas, Colomban de; Ribera d’Alcalà, Maurizio; Iudicone, Daniele; Jaillon, Olivier; Tara Oceans Coordinatorsartículo
closedAccess26-Aug-2014Global cross-domain diversity patterns of picoplankton in the photic and aphotic oceanSalazar, Guillem CSIC ORCID; Logares, Ramiro CSIC ORCID ; Cornejo-Castillo, Francisco M. CSIC ORCID; Sunagawa, Shinichi; Bork, Peer; Gasol, Josep M. CSIC ORCID ; Acinas, Silvia G. CSIC ORCID póster de congreso
closedAccessDec-2016Global genetic capacity for mixotrophy in marine picocyanobacteriaYelton, A.P.; Acinas, Silvia G. CSIC ORCID ; Sunagawa, Shinichi; Bork, Peer; Pedrós-Alió, Carlos CSIC ORCID; Chisholm, Sallie W.artículo
openAccessIbarbalz_et_al_2019.pdf.jpgNov-2019Global Trends in Marine Plankton Diversity across Kingdoms of LifeIbarbalz, Federico M.; Henry, Nicolas; Brandão, Manoela C.; Martini, Séverine; Busseni, Greta; Byrne, Hannah; Coelho, Luis Pedro; Endo, Hisashi; Gasol, Josep M. CSIC ORCID ; Gregory, Ann C.; Mahé, Frédéric; Rigonato, Janaina; Royo-Llonch, Marta CSIC ORCID ; Salazar, Guillem CSIC ORCID; Sanz-Sáez, Isabel CSIC ORCID ; Scalco, Eleonora; Soviadan, Yawouvi Dodji; Zayed, Ahmed A.; Zingone, Adriana; Labadie, Karine; Ferland, Joannie; Marec, Claudie; Kandels‐Lewis, Stefanie; Picheral, Marc; Dimier, Céline; Poulain, Julie; Pisarev, Sergey; Carmichael, Margaux; Pesant, Stéphane; Babin, Marcel; Boss, Emmanuel; Iudicone, Daniele; Jaillon, Olivier; Acinas, Silvia G. CSIC ORCID ; Ogata, Hiroyuki; Pelletier, Eric; Stemmann, Lars; Sullivan, Matthew B.; Sunagawa, Shinichi; Bopp, Laurent; Vargas, Colomban de; Karp-Boss, Lee; Wincker, Patrick; Lombard, Fabien; Bowler, Chris; Zinger, Lucieartículo
closedAccess8-Jun-2023Heterotrophic Cultured Bacteria Represent a Substantial Diversity of the Deep Ocean and Particle MicrobiomeAcinas, Silvia G. CSIC ORCID ; Sanz-Sáez, Isabel CSIC ORCID ; Sánchez Fernández, Pablo CSIC ORCID ; Salazar, Guillem CSIC ORCID; Sunagawa, Shinichi; Vargas, Colomban de; Bowler, Chris; Sullivan, Matthew B.; Wincker, Patrick; Karsenti, Eric; Pedrós-Alió, Carlos CSIC ORCID; Agustí, Susana CSIC ORCID; Gojobori, Takashi; Duarte, Carlos M. CSIC ORCID; Gasol, Josep M. CSIC ORCID ; Sánchez, Olga CSIC ORCIDcomunicación de congreso
closedAccessSep-2019Heterotrophic cultured bacteria represent an important fraction of the diversity of the deep oceanSanz-Sáez, Isabel CSIC ORCID ; Salazar, Guillem CSIC ORCID; Sunagawa, Shinichi; Vargas, Colomban de; Wincker, Patrick; Duarte, Carlos M. CSIC ORCID; Gasol, Josep M. CSIC ORCID ; Sánchez, Olga CSIC ORCID; Acinas, Silvia G. CSIC ORCID comunicación de congreso
openAccessGregory_et_al_2019_preprint.pdf.jpgMay-2019Marine DNA Viral Macro- and Microdiversity from Pole to PoleGregory, Ann C.; Zayed, Ahmed A.; Conceição-Neto, Nadia; Temperton, Ben; Alberti, Adriana; Ardyna, Mathieu; Arkhipova, Ksenia; Carmichael, Margaux; Cruaud, Corinne; Dimier, Céline; Domínguez-Huerta, Guillermo; Ferland, Joannie; Kandels‐Lewis, Stefanie; Liu, Yunxiao; Marec, Claudie; Pesant, Stéphane; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Tremblay, J. E.; Vik, Dean; Acinas, Silvia G. CSIC ORCID ; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; Vargas, Colomban de; Follows, Michael J.; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Kandels‐Lewis, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice CSIC ORCID; Ogata, Hiroyuki; Pesant, Stéphane; Poulton, N.J.; Raes, Jeroen; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sunagawa, Shinichi; Wincker, Patrick; Culley, Alexander I.; Dutilh, Bas E.; Roux, Simon; Sullivan, Matthew B.artículo
closedAccessJun-2017Marine microbial diversitySalazar, Guillem CSIC ORCID; Sunagawa, Shinichiartículo
openAccessSalazar_et_al_2022.pdf.jpgJan-2022mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genesSalazar, Guillem CSIC ORCID; Ruscheweyh, Hans-Joachim; Hildebrand, Falk; Hildebrand, Falk , Silvia G.; Sunagawa, Shinichiartículo
openAccessDec-2023Ocean-wide comparisons of mesopelagic planktonic community structuresRigonato, Janaina; Budinich, Marko; Murillo, Alejandro A.; Brandão, Manoela C.; Pierella Karlusich, Juan J.; Soviadan, Yawouvi Dodji; Gregory, Ann C.; Endo, Hisashi; Kokoszka, Florian; Vik, Dean; Henry, Nicolas; Frémont, Paul; Labadie, Karine; Zayed, Ahmed A.; Dimier, Céline; Picheral, Marc; Searson, Sarah; Poulain, Julie; Kandels‐Lewis, Stefanie; Pesant, Stéphane; Karsenti, Eric; Tara Oceans Coordinators; Acinas, Silvia G. CSIC ORCID ; Bork, Peer; Bowler, Chris; Vargas, Colomban de; Eveillard, Damien; Gehlen, Marion; Iudicone, Daniele; Lombard, Fabien; Ogata, Hiroyuki; Stemmann, Lars; Sullivan, Matthew B.; Sunagawa, Shinichi; Wincker, Patrick; Chaffron, Samuel; Jaillon, Olivierartículo
openAccessproGenomes2_an_improved.pdf.jpg1-Jan-2020proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomesMende, Daniel R.; Letunic, Ivica; Maistrenko, Oleksandr M.; Schmidt, Thomas Sebastian; Milanese, Alessio; Paoli, Lucas; Hernández-Plaza, Ana; Orakov, Askarbek; Forslund, Sofía K.; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; Coelho, Luis Pedro; Bork, Peerartículo