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openAccess267Spanish.pdf.jpg13-Jan-2016267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic VariationDopazo, Joaquín CSIC ORCID; Rodríguez-Pérez, Juan Antonio CSIC ORCID; Daub, Josephine T. CSIC ORCID; Muntané, Gerard CSIC ORCID; Ruiz-Ferrer, Macarena CSIC; Méndez-Vidal, Cristina CSIC ORCID; Bhattacharya, Shom Shanker CSIC ORCID; Borrego, Salud CSIC ORCID; Antiñolo, Guillermo CSIC ORCIDartículo
openAccess21-Actionable-Pharmacogenes.pdf.jpg19-Apr-2023A Comprehensive Analysis of 21 Actionable Pharmacogenes in the Spanish Population: From Genetic Characterisation to Clinical ImpactNúñez-Torres, Rocío; Pita, Guillermo; Peña-Chilet, María CSIC ORCID; López-López, Daniel CSIC ORCID; Zamora, Jorge; Roldán, Gema; Herráez, Belén; Álvarez, Nuria; Alonso, María Rosario; Dopazo, Joaquín CSIC ORCID; González-Neira, Annaartículo
openAccessautoimmune_diseases.pdf.jpg24-Jun-2021A comprehensive database for integrated analysis of omics data in autoimmune diseasesMartorell-Marugán, Jordi; López-Domínguez, Raúl; García-Moreno, Adrián; Toro-Domínguez, Daniel; Villatoro-García, Juan Antonio; Barturen, Guillermo; Martín-Gómez, Adoración; Troule, Kevin; Gómez-López, Gonzalo; Al-Shahrour, Fátima; González-Rumayor, Víctor; Peña-Chilet, María CSIC ORCID; Dopazo, Joaquín CSIC ORCID; Sáez-Rodríguez, Julio; Alarcón-Riquelme, Marta E.; Carmona-Sáez, Pedroartículo
openAccesscrowdsourcing_HG_2023_OA.pdf.jpg9-Mar-2023A crowdsourcing database for the copy-number variation of the Spanish populationLópez-López, Daniel CSIC ORCID; Roldán, Gema; Fernández-Rueda, José L.; Bostelmann, Gerrit; Carmona, Rosario CSIC ORCID; Aquino, Virginia; Pérez-Florido, Javier CSIC; Ortuño, Francisco; Pita, Guillermo; Núñez-Torres, Rocío; González-Neira, Anna; CSVS Crowdsourcing Group; Peña-Chilet, María CSIC ORCID; Dopazo, Joaquín CSIC ORCIDartículo
openAccessDNA_damage_repair.pdf.jpgDec-2021A DNA damage repair gene-associated signature predicts responses of patients with advanced soft-tissue sarcoma to treatment with trabectedinMoura, David S. CSIC ORCID; Peña-Chilet, María CSIC ORCID; Cordero Varela, Juan Antonio CSIC ORCID; Álvarez-Alegret, Ramiro; Agra-Pujol, Carolina; Izquierdo, Francisco; Ramos, Rafael; Ortega-Medina, Luis; Martín-Dávila, Francisco; Castilla, Carolina CSIC; Hernández-León, Carmen Nieves; Romagosa, Cleofe; Vaz Salgado, María Ángeles; Lavernia, Javier; Bagué, Silvia; Mayordomo-Aranda, Empar; Vicioso, Luis; Hernández Barceló, José Emilio; Rubió-Casadevall, Jordi; Juan, Ana de; Fiaño-Valverde, María Concepción; Hindi, Nadia CSIC ORCID; López-Álvarez, María; Lacerenza, Serena; Dopazo, Joaquín CSIC ORCID; Gutiérrez, Antonio; Álvarez, Rosa; Valverde, Claudia M.; Martínez-Trufero, Javier; Martín-Broto, Javier CSIC ORCIDartículo
openAccessgm363.pdf.jpg24-Aug-2012A map of human microRNA variation uncovers unexpectedly high levels of variabilityCarbonell, José; Alloza, Eva; Arce, Pablo; Borrego, Salud CSIC ORCID; Santoyo-López, Javier; Ruiz-Ferrer, Macarena CSIC; Medina, Ignacio; Jiménez-Almazán, Jorge; Méndez-Vidal, Cristina CSIC ORCID; González-del Pozo, María; Vela, Alicia; Bhattacharya, Shom Shanker CSIC ORCID; Antiñolo, Guillermo CSIC ORCID; Dopazo, Joaquín CSIC ORCIDartículo
openAccesssignaling_pathways.pdf.jpg11-Feb-2021A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathwaysGarrido-Rodriguez, Martín; López-López, Daniel CSIC ORCID; Ortuño, Francisco M. CSIC; Peña-Chilet, María CSIC ORCID; Muñoz, Eduardo CSIC; Calzado, Marco A.; Dopazo, Joaquín CSIC ORCIDartículo
openAccess13-Apr-2023Additional file 1 of A crowdsourcing database for the copy-number variation of the Spanish populationLópez-López, Daniel CSIC ORCID; Roldán, Gema; Fernández-Rueda, José L.; Bostelmann, Gerrit; Carmona, Rosario CSIC ORCID; Aquino, Virginia; Pérez-Florido, Javier CSIC; Ortuño, Francisco; Pita, Guillermo; Núñez-Torres, Rocío; González-Neira, Anna; CSVS Crowdsourcing Group; Peña-Chilet, María CSIC ORCID; Dopazo, Joaquín CSIC ORCIDdataset
openAccessRNA-seq-data.pdf.jpg4-Jan-2022Additional file 1 of Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq dataGundogdu, Pelin; Loucera, Carlos CSIC ORCID; Alamo-Alvarez, Inmaculada CSIC ORCID; Dopazo, Joaquín CSIC ORCID; Nepomuceno, Isabeldataset
openAccess13-Apr-2023Additional file 2 of A crowdsourcing database for the copy-number variation of the Spanish populationLópez-López, Daniel CSIC ORCID; Roldán, Gema; Fernández-Rueda, José L.; Bostelmann, Gerrit; Carmona, Rosario CSIC ORCID; Aquino, Virginia; Pérez-Florido, Javier CSIC; Ortuño, Francisco; Pita, Guillermo; Núñez-Torres, Rocío; González-Neira, Anna; CSVS Crowdsourcing Group; Peña-Chilet, María CSIC ORCID; Dopazo, Joaquín CSIC ORCIDdataset
openAccessviruses-14-01893.pdf.jpg27-Aug-2022Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient SurvivalLoucera, Carlos CSIC ORCID; Pérez-Florido, Javier CSIC; Casimiro-Soriguer, Carlos S. CSIC ORCID CVN; Ortuño, Francisco M. CSIC; Carmona, Rosario CSIC ORCID; Bostelmann, Gerrit; Martínez-González, Luis Javier; Muñoyerro-Muñiz, Dolores; Villegas-Portero, Román; Rodríguez-Baño, Jesús CSIC ORCID; Romero-Gómez, Manuel CSIC ORCID CVN; Lorusso, Nicola; García-León, Francisco Javier; Navarro-Marí, José María; Camacho‐Martínez, Pedro; Merino Díaz, Laura CSIC; Salazar, Adolfo de; Viñuela, Laura; The Andalusian COVID-19 Sequencing Initiative; Lepe, José A. CSIC ORCID; García, Federico; Dopazo, Joaquín CSIC ORCIDartículo
closedAccessaccesoRestringido.pdf.jpgJan-2020Association of a single nucleotide polymorphism in the ubxn6 gene with long-term non-progression phenotype in HIV-positive individualsDíez-Fuertes, Francisco; Torre-Tarazona, H.E.De La; Calonge, E.; Pernas, María; Bermejo, M.; García-Pérez, A.; Álvarez, A.; Capa, L.; García-García, Francisco; Saumoy, M.; Riera, Melchor; Boland-Auge, A.; López-Galíndez, Cecilio; Lathrop, M.; Dopazo, Joaquín CSIC ORCID; Sakuntabhai, A.; Alcamí, José CSIC ORCIDartículo
openAccessauthor_correction_COVID-19.pdf.jpg17-Jul-2020Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanismsOstaszewski, Marek; Mazein, Alexander; Gillespie, Marc E.; Kuperstein, Inna; Niarakis, Anna; Hermjakob, Henning; Pico, Alexander R.; Willighagen, Egon L.; Evelo, Chris T.; Hasenauer, Jan; Schreiber, Falk; Dräger, Andreas; Demir, Emek; Wolkenhauer, Olaf; Furlong, Laura. I.; Barillot, Emmanuel; Dopazo, Joaquín CSIC ORCID; Orta-Resendiz, Aurelio; Messina, Francesco; Valencia, Alfonso; Funahashi, Akira; Kitano, Hiroaki; Auffray, Charles; Balling, Rudi; Schneider, Reinhardcorrigenda
closedAccess14-Jan-2012CITRUSEQ/CITRUSGENN: a Genomic Approach to Citrus BreedingTalón, Manuel; Colmenero Flores, José M. CSIC ORCID ; Dopazo, Joaquín CSIC ORCIDcomunicación de congreso
openAccessIgf1arrays.pdf.jpg2015Comparative gene expression study of the vestibular organ of the Igf1 deficient mouse using whole-transcript arraysRodriguez-de la Rosa, Lourdes CSIC ORCID; Sánchez-Calderón, Hortensia CSIC; Contreras, Julio CSIC; Murillo-Cuesta, Silvia CSIC ORCID; Falagan, Sandra; Avendaño, Carlos; Dopazo, Joaquín CSIC ORCID; Varela-Nieto, Isabel CSIC ORCID ; Milo, Martaartículo
closedAccessaccesoRestringido.pdf.jpgOct-1995Confidence limits for resolution estimation in image averaging by random subsamplingFraga, Luis Gerardo de la; Dopazo, Joaquín CSIC ORCID; Carazo, José M.artículo
openAccessCOVID-19.pdf.jpg5-May-2020COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanismsOstaszewski, Marek; Mazein, Alexander; Gillespie, Marc E.; Kuperstein, Inna; Niarakis, Anna; Hermjakob, Henning; Pico, Alexander R.; Willighagen, Egon L.; Evelo, Chris T.; Hasenauer, Jan; Schreiber, Falk; Dräger, Andreas; Demir, Emek; Wolkenhauer, Olaf; Furlong, Laura. I.; Barillot, Emmanuel; Dopazo, Joaquín CSIC ORCID; Orta-Resendiz, Aurelio; Messina, Francesco; Valencia, Alfonso; Funahashi, Akira; Kitano, Hiroaki; Auffray, Charles; Balling, Rudi; Schneider, Reinhardartículo
openAccessinteraction_mechanisms.pdf.jpg19-Oct-2021COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanismsOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Schreiber, Falk; Montagud, Arnau; Ponce de León, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Dräger, Andreas; Renz, Alina; Naveez, Muhammad; Orlic-Milacic, Marija; Bocskei, Zsolt; Messina, Francesco; Börnigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Senff Ribeiro, Andrea; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gökçe Yagmu; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Rothfels, Karen; Eijssen, Lars; Ehrhart, Friederike; Arokia Balaya Rex, Devasahayam; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Shamovsky, Veronic; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Soliman, Sylvain; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Valdeolivas, Alberto; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vázquez, Miguel; Porras, Pablo; Esteban-Medina, Marina CSIC ORCID; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; Waard, Anita de; Turei, Denes; Luna, Augustín; Babur, Ozgun; Peña-Chilet, María CSIC ORCID; Rian, Kinza; Helikar, Tomas; Lal Puniya, Bhanwar; Modos, Dezso; Treveil, Agatha; Olbe, Marton; Fobo, Gisela; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noël, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Montrone, Corinna; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L .; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; Brauner, Barbara; D’Eustachio, Peter; Sáez-Rodríguez, Julio; Dopazo, Joaquín CSIC ORCID; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard; Frishman, Goar; Monraz Gómez, Luis Cristóbal; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobiasartículo
openAccessBreast-Cancer.pdf.jpg18-Apr-2023Crosstalk between Metabolite Production and Signaling Activity in Breast CancerÇubuk, Cankut; Loucera, Carlos CSIC ORCID; Peña-Chilet, María CSIC ORCID; Dopazo, Joaquín CSIC ORCIDartículo
openAccessCSVS.pdf.jpg8-Jan-2021CSVS, a crowdsourcing database of the Spanish population genetic variabilityPeña-Chilet, María CSIC ORCID; Roldán, Gema; Pérez-Florido, Javier CSIC; Ortuño, Francisco M. CSIC; Carmona, Rosario CSIC ORCID; Aquino, Virginia; López-López, Daniel CSIC ORCID; Loucera, Carlos CSIC ORCID; Fernández-Rueda, José L.; Gallego, Asunción; García-García, Francisco; González-Neira, Anna; Pita, Guillermo; Núñez-Torres, Rocío; Santoyo-López, Javier; Ayuso, Carmen; Mínguez, Pablo; Ávila-Fernández, Almudena; Cortón, Marta; Moreno-Pelayo, Miguel Ángel; Morin, Matías; Gallego-Martinez, Álvaro; López-Escamez, José A.; Borrego, Salud CSIC ORCID; Antiñolo, Guillermo CSIC ORCID; Amigo, Jorge; Salgado-Garrido, Josefa; Pasalodos-Sánchez, Sara; Morte, Beatriz CSIC ORCID; Spanish Exome Crowdsourcing Consortium; Carracedo, Ángel; Alonso, Ángel; Dopazo, Joaquín CSIC ORCIDartículo