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openAccess2020 Sci Data 7-69.pdf.jpg27-Feb-2020A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6Nuño-Cabanes, Carme CSIC; Ugidos, Manuel CSIC ORCID; Tarazona, Sonia; Martín-Expósito, Manuel CSIC ORCID; Ferrer, Alberto; Rodríguez-Navarro, Susana CSIC ORCID ; Conesa, Ana CSIC ORCIDartículo
openAccessanextflowdata.pdf.jpg2022A Nextflow pipeline for T-cell receptor repertoire reconstruction and analysis from RNA sequencing dataRubio, Teresa CSIC ORCID; Chernigovskaya, Maria; Marquez, Susanna; Marti, Cristina; Izquierdo-Altarejos, Paula; Urios, Amparo; Montoliu, Carmina; Felipo, Vicente; Conesa, Ana CSIC ORCID; Greiff, Victor; Tarazona, Soniaartículo
openAccessaroadmaper.pdf.jpg2022A roadmap for the functional annotation of protein families: a community perspectiveCrécy-lagard, Valérie de; Conesa, Ana CSIC ORCIDartículo
openAccessacorde.pdf.jpg2022acorde unravels functionally interpretable networks of isoform co-usage from single cell dataArzalluz-Luque, Angeles CSIC ORCID; Salguero, Pedro; Tarazona, Sonia; Conesa, Ana CSIC ORCIDartículo
openAccessfimmu-13-834851.pdf.jpg27-Jan-2022Association between sex hormone levels and clinical outcomes in patients with COVID-19 admitted to hospital: An observational, retrospective, cohort studyBeltrame, Anna; Salguero, Pedro; Rossi, Emanuela; Conesa, Ana CSIC ORCID; Moro, Lucia; Bettini, Laura Rachele; Rizzi, Eleonora; D’Angió, Mariella; Deiana, Michela; Piubelli, Chiara; Rebora, Paola; Duranti, Silvia; Bonfanti, Paolo; Capua, Ilaria; Tarazona, Sonia; Valsecchi, Maria Graziaartículo
openAccess2023Differences in uterine and serum metabolome associated with metritis in dairy cowsFigueiredo, Caio C.; Balzano-Nogueira, Leandro; Bisinotto, Danilo Zago; Revilla Ruiz, A.; Duarte, Gabriel A.; Conesa, Ana CSIC ORCID; Galvão, Klibs N.; Bisinotto, R. S.artículo
openAccessECCB2022.pdf.jpg2022ECCB2022: the 21st European Conference on Computational BiologyCapella-Gutierrez, Salvador; Alloza, Eva; Rubinat-Ripoll, Laura; Conesa, Ana CSIC ORCID; Valencia, Alfonsoeditorial
openAccessenhanproteo.pdf.jpg2022Enhanced protein isoform characterization through long-read proteogenomicsMiller, Rachel M.; Jordan, Ben T.; Mehlferber, Madison M.; Jeffery, Erin D.; Chatzipantsiou, Christina; Kaur, Simi; Millikin, Robert J.; Dai, Yunxiang; Tiberi, Simone; Castaldi, Peter J.; Shortreed, Michael R.; Luckey, Chance John; Conesa, Ana CSIC ORCID; Smith, Lloyd M.; Deslattes Mays, Anne; Sheynkman, Gloria M.artículo
openAccesspneumocystis_reinaRoja_evy116.pdf.jpg11-Jun-2018Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in PneumocystisDelaye, Luis; Ruiz-Ruiz, Susana CSIC; Calderón, Enrique J. CSIC ORCID; Tarazona, Sonia; Conesa, Ana CSIC ORCID; Moya, Andrés CSIC ORCIDartículo
closedAccessaccesoRestringido.pdf.jpg2022Flap-enabled next-generation capture (FENGC): precision targeted single-molecule profiling of epigenetic heterogeneity, chromatin dynamics, and genetic variationZhou, Mingqi; Nabilsi, Nancy H.; Wang, Anqi; Gauthier, Marie-Pierre L.; Murray, Kevin O.; Azari, Hassan; Owens, William S.; Newman, Jeremy R. B.; Pardo-Palacios, Francisco J.; Conesa, Ana CSIC ORCID; Riva, Alberto; Clanton, Thomas L.; Reynolds, Brent A.; Concannon, Patrick; Brant, Jason O.; Bacher, Rhonda; Kladde, Michael P.preprint
openAccessFundamentos_aplicaciones.pdf.jpgOct-2005Fundamentos y aplicaciones posibles de la genómica de cítricosTalón Cubillo, Manuel; Carrillo, José Antonio; Cercós, Manuel CSIC; Colmenero Flores, José M. CSIC ORCID ; Conesa, Ana CSIC ORCID; Iglesias Fuentes, Domingo; Tadeo Serrano, Francisco; Terol, Javierartículo
openAccessgaitdisea.pdf.jpg2022GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson’s diseaseMcIntyre, Lauren M.; Huertas, Francisco; Morse, Alison M.; Kaletsky, Rachel; Murphy, Coleen T.; Kalia, Vrinda; Miller, Gary W.; Moskalenko, Olexander; Conesa, Ana CSIC ORCID; Mor, Danielle E.artículo
openAccessRNA-seqtimeseries.pdf.jpg2018Identification and visualization of differential isoform expression in RNA-seq time seriesNueda, María José; Martorell-Marugan, Jordi; Marti, Cristina; Tarazona, Sonia; Conesa, Ana CSIC ORCIDartículo
openAccess2023Identification of food and nutrient components as predictors of Lactobacillus colonizationThompson, Sharon C.; Ford, Amanda L.; Moothedan, Elijah J.; Stafford, Lauren S.; Garrett, Timothy J.; Dahl, Wendy J.; Conesa, Ana CSIC ORCID; Gonzalez, Claudio F.; Lorca, Graciela L.artículo
openAccessindeptyp.pdf.jpg2022Independent phenotypic plasticity axes define distinct obesity sub-typesYang, Chih-Hsiang; Conesa, Ana CSIC ORCID; Pospisilik, J. Andrewartículo
openAccess2023Integration of multi-omics data to elucidate keystone unknown taxa within microbialite-forming ecosystemsAmorín de Hegedüs, Rocío; Conesa, Ana CSIC ORCID; Foster, Jamie S.artículo
openAccess2021 Genome Biology 22-39.pdf.jpg21-Jan-2021Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetesBalzano-Nogueira, Leandro; Ramirez, Ricardo; Zamkovaya, Tatyana; Dailey, Jordan; Ardissone, Alexandria N.; Chamala, Srikar; Serrano-Quílez, Joan CSIC ORCID ; Rubio, Teresa CSIC ORCID; Haller, Michael J.; Concannon, Patrick; Atkinson, Mark A.; Schatz, Desmond A.; Triplett, Eric W.; Conesa, Ana CSIC ORCIDartículo
openAccess3-Jul-2023Jornada de Biología computacional, ciencia de datos e inteligencia artificialAguilar, Fernando CSIC ORCID ; Martell, José María CSIC ORCID ; Sorzano, Carlos Óscar S.; Aguado, Begoña CSIC ORCID; Vera García, Jacinto; Rodríguez González, David CSIC ORCID; Val, Margarita del CSIC ORCID; Ramasco, José J. CSIC ORCID ; Rodríguez Santana, Simón; Sánchez-Carrillo, Sergio; Conesa, Ana CSIC ORCID; Rojas Mendoza, Ana M. CSIC ORCID ; Paniw, Maria; Tejedor, Juan Ramón CSIC ORCID ; Menéndez de la Prida, Liset CSIC ORCID ; García Ortíz, Inés; Ríos, David; Moreno-Arribas, M. Victoria CSIC ORCID ; Pérez-Tur, Jordi CSIC ORCID ; Gabinete de Presidencia CSIC; Departamento de Comunicación CSICvídeo
openAccessmambamethod.pdf.jpg2022MAMBA: a model-driven, constraint-based multiomic integration methodUgidos, Manuel CSIC ORCID; Nuño-Cabanes, Carme CSIC; Tarazona, Sonia; Ferrer, Alberto; Keld Nielsen, Lars; Rodríguez-Navarro, Susana CSIC ORCID ; Marín de Mas, Igor CSIC; Conesa, Ana CSIC ORCIDpreprint
closedAccess2009Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocksBrumós Fuentes, Javier; Colmenero Flores, José M. CSIC ORCID ; Conesa, Ana CSIC ORCID; Izquierdo Zaragoza, Pedro; Sánchez Silva, Guadalupe; Iglesias Fuentes, Domingo; López Climent, M. F.; Gómez Cadenas, Aurelio; Talón Cubillo, Manuelartículo