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openAccessMol_Syst_Biol_Fdez-Tornero_2010.pdf.jpg30-Nov-2010A systematic screen for protein-lipid interactions in Saccharomyces cerevisiaeGallego, Oriol; Betts, Matthew J.; Gvozdenovic-Jeremic, Jelena; Maeda, Kenji; Matetzki, Christian; Aguilar-Gurrieri, Carmen; Beltrán-Álvarez, Pedro; Bonn, Stefan; Fernández-Tornero, Carlos CSIC ORCID ; Jensen, Lars Juhl; Kuhn, Michael; Trott, Jamie; Rybin, Vladimir; Müller, Christoph W.; Bork, Peer; Kaksonen, Marko; Russell, Robert B.; Gavin, Anne-Claudeartículo
openAccessPaoli_et_al_2022.pdf.jpgJun-2022Biosynthetic potential of the global ocean microbiomePaoli, Lucas; Ruscheweyh, Hans-Joachim; Forneris, Clarissa C.; Hubrich, Florian; Kautsar, Satria; Bhushan, Agneya; Lotti, Alessandro; Clayssen, Quentin; Salazar, Guillem CSIC ORCID; Milanese, Alessio; Carlström, Charlotte I.; Papadopoulou, Chrysa; Gehrig, Daniel; Karasikov, Mikhaill; Mustafa, Harun; Larralde, Martin; Carroll, Laura M.; Sánchez Fernández, Pablo CSIC ORCID ; Zayed, Ahmed A.; Cronin, Dylan R.; Acinas, Silvia G. CSIC ORCID ; Bork, Peer; Bowler, Chris; Delmont, Tom O.; Gasol, Josep M. CSIC ORCID ; Gossert, Alvar D.; Kahles, André; Sullivan, Matthew B.; Wincker, Patrick; Zeller, Georg; Robinson, Serina L.; Piel, Jörn; Sunagawa, Shinichiartículo
openAccessCaputi_et_al_2019.pdf.jpgJan-2019Community‐Level Responses to Iron Availability in Open Ocean Plankton EcosystemsCaputi, Luigi; Carradec, Quentin; Eveillard, Damien; Kirilovsky, Amos; Pelletier, Eric; Pierella Karlusich, Juan J.; Rocha Jimenez Vieira, Fabio; Villar, Emilie; Chaffron, Samuel; Malviya, Shruti; Scalco, Eleonora; Acinas, Silvia G. CSIC ORCID ; Alberti, Adriana; Aury, Jean‐Marc; Benoiston, Anne‐Sophie; Bertrand, Alexis; Biard, Tristan; Bittner, Lucie; Boccara, Martine; Brum, Jennifer R.; Brunet, Christophe; Busseni, Greta; Carratalà, Anna; Claustre, Hervé; Coelho, Luis Pedro; Colin, Sebastien; D'Aniello, Salvatore; Da Silva, Corinne; Del Core, Marianna; Doré, Hugo; Gasparini, Stéphane; Kokoszka, Florian; Jamet, Jean‐Louis; Lejeusne, Christophe CSIC ORCID; Lepoivre, Cyrille; Lescot, Magali; Lima-Mendez, Gipsi; Lombard, Fabien; Lukeš, Julius; Maillet, Nicolas; Madoui, Mohammed‐Amin; Martinez, Elodie; Mazzocchi, M. G.; Néou, Mario B.; Paz‐Yepes, Javier; Poulain, Julie; Ramondenc, Simon; Romagnan, Jean-Baptiste; Roux, Simon; Salvagio Manta, Daniela; Sanges, R.; Speich, Sabrina; Sprovieri, M.; Sunagawa, Shinichi; Taillandier, Vincent; Tanaka, Atsuko; Tirichine, Leila; Trottier, Camille; Uitz, Julia; Veluchamy, Alaguraj; Veselá, Jana; Vincent, Flora; Yau, Sheree CSIC ORCID ; Kandels‐Lewis, Stefanie; Searson, Sarah; Dimier, Céline; Picheral, Marc; Bork, Peer; Boss, Emmanuel; Vargas, Colomban de; Follows, Michael J.; Grimsley, Nigel; Hingamp, Pascal; Karsenti, Eric; Sordino, Paolo; Stemmann, Lars; Sullivan, Matthew B.; Tagliabue, Alessandro; Zingone, Adriana; Garczarek, Laurence; D'Ortenzio, Fabrizio; Testor, Pierre; Not, Fabrice CSIC ORCID; Ribera d’Alcalà, Maurizio; Wincker, Patrick; Bowler, Chris; Guidi, Lionel; Iudicone, Danieleartículo
openAccess11-Feb-2021Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systemsRichter, Daniel J. CSIC ORCID ; Watteaux, Romain; Vannier, Thomas; Leconte, Jade; Frémont, Paul; Reygondeau, Gabriel; Maillet, Nicolas; Henry, Nicolas; Benoit, Gaëtan; da Silva, Ophélie; Delmont, Tom O.; Fernández-Guerra, Antonio; Suweis, Samir; Narci, Romain; Berney, Cedric; Eveillard, Damien; Gavory, Frederick; Guidi, Lionel; Labadie, Karine; Mahieu, Eric; Poulain, Julie; Romac, Sarah; Roux, Simon; Dimier, Céline; Kandels‐Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Oceans, Tara; Pesant, Stéphane; Aury, Jean‐Marc; Brum, Jennifer R.; Lemaitre, Claire; Pelletier, Eric; Bork, Peer; Sunagawa, Shinichi; Lombard, Fabien; Karp-Boss, Lee; Bowler, Chris; Sullivan, Matthew B.; Karsenti, Eric; Mariadassou, Mahendra; Probert, Ian; Peterlongo, Pierre; Wincker, Patrick; Vargas, Colomban de; Ribera d’Alcalà, Maurizio; Iudicone, Daniele; Jaillon, Olivier; Tara Oceans Coordinatorsdataset
openAccessAcinas_et_al_2021.pdf.jpgMay-2021Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communitiesAcinas, Silvia G. CSIC ORCID ; Sánchez Fernández, Pablo CSIC ORCID ; Salazar, Guillem CSIC ORCID; Cornejo-Castillo, Francisco M. CSIC ORCID; Sebastián, Marta CSIC ORCID; Logares, Ramiro CSIC ORCID ; Royo-Llonch, Marta CSIC ORCID ; Paoli, Lucas; Sunagawa, Shinichi; Hingamp, Pascal; Ogata, Hiroyuki; Lima-Mendez, Gipsi; Roux, Simon; González, José M.; Arrieta López de Uralde, Jesús M. CSIC ORCID ; Alam, Intikhab; Kamau, Allan A.; Bowler, Chris; Raes, Jeroen; Pesant, Stéphane; Bork, Peer; Agustí, Susana CSIC ORCID; Gojobori, Takashi; Vaqué, Dolors CSIC ORCID ; Sullivan, Matthew B.; Pedrós-Alió, Carlos CSIC ORCID; Massana, Ramon CSIC ORCID ; Duarte, Carlos M. CSIC ORCID; Gasol, Josep M. CSIC ORCID artículo
openAccessDisentangling_the_impact_of.pdf.jpg1-May-2020Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversityMaistrenko, Oleksandr M.; Mende, Daniel R.; Luetge, Mechthild; Hildebrand, Falk; Schmidt, Thomas Sebastian; Li, Simone S.; Rodrigues, Joao Frederico Matias; von Mering, Christian; Coelho, Luis Pedro; Huerta-Cepas, Jaime; Sunagawa, Shinichi; Bork, Peerartículo
openAccesseggNOG_6.0_enabling_comparative.pdf.jpg6-Jan-2023eggNOG 6.0: enabling comparative genomics across 12 535 organismsHernández-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P; Giner-Lamia, Joaquín CSIC ORCID; Mende, Daniel R.; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica; Jensen, Lars J.; Bork, Peer; von Mering, Christian; Huerta-Cepas, Jaimeartículo
openAccesseggNOG_mapper_v2_Functional_Annotation_Orthology.pdf.jpg1-Oct-2021eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic ScaleCantalapiedra, Carlos P; Hernández-Plaza, Ana; Letunic, Ivica; Bork, Peer; Huerta-Cepas, Jaimeartículo
openAccessSalazar_et_al_2019.pdf.jpgNov-2019Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean MetatranscriptomeSalazar, Guillem CSIC ORCID; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta CSIC ORCID ; Roux, Simon; Sánchez Fernández, Pablo CSIC ORCID ; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Ferland, Joannie; Kandels‐Lewis, Stefanie; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Acinas, Silvia G. CSIC ORCID ; Babin, Marcel; Bork, Peer; Bowler, Chris; Vargas, Colomban de; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Karp-Boss, Lee; Karsenti, Eric; Ogata, Hiroyuki; Pesant, Stéphane; Speich, Sabrina; Sullivan, Matthew B.; Wincker, Patrick; Sunagawa, Shinichiartículo
openAccessGenomic_evidence_for_global_ocean.pdf.jpg3-Aug-2022Genomic evidence for global ocean plankton biogeography shaped by large-scale current systemsRichter, Daniel J. CSIC ORCID ; Watteaux, Romain; Vannier, Thomas; Leconte, Jade; Frémont, Paul; Reygondeau, Gabriel; Maillet, Nicolas; Henry, Nicolas; Benoit, Gaëtan; da Silva, Ophélie; Delmont, Tom O.; Fernández-Guerra, Antonio; Suweis, Samir; Narci, Romain; Berney, Cedric; Eveillard, Damien; Gavory, Frederick; Guidi, Lionel; Labadie, Karine; Mahieu, Eric; Poulain, Julie; Romac, Sarah; Roux, Simon; Dimier, Céline; Kandels‐Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Oceans, Tara; Pesant, Stéphane; Aury, Jean‐Marc; Brum, Jennifer R.; Lemaitre, Claire; Pelletier, Eric; Bork, Peer; Sunagawa, Shinichi; Lombard, Fabien; Karp-Boss, Lee; Bowler, Chris; Sullivan, Matthew B.; Karsenti, Eric; Mariadassou, Mahendra; Probert, Ian; Peterlongo, Pierre; Wincker, Patrick; Vargas, Colomban de; Ribera d’Alcalà, Maurizio; Iudicone, Daniele; Jaillon, Olivier; Tara Oceans Coordinatorsartículo
closedAccess26-Aug-2014Global cross-domain diversity patterns of picoplankton in the photic and aphotic oceanSalazar, Guillem CSIC ORCID; Logares, Ramiro CSIC ORCID ; Cornejo-Castillo, Francisco M. CSIC ORCID; Sunagawa, Shinichi; Bork, Peer; Gasol, Josep M. CSIC ORCID ; Acinas, Silvia G. CSIC ORCID póster de congreso
closedAccessDec-2016Global genetic capacity for mixotrophy in marine picocyanobacteriaYelton, A.P.; Acinas, Silvia G. CSIC ORCID ; Sunagawa, Shinichi; Bork, Peer; Pedrós-Alió, Carlos CSIC ORCID; Chisholm, Sallie W.artículo
openAccessGregory_et_al_2019_preprint.pdf.jpgMay-2019Marine DNA Viral Macro- and Microdiversity from Pole to PoleGregory, Ann C.; Zayed, Ahmed A.; Conceição-Neto, Nadia; Temperton, Ben; Alberti, Adriana; Ardyna, Mathieu; Arkhipova, Ksenia; Carmichael, Margaux; Cruaud, Corinne; Dimier, Céline; Domínguez-Huerta, Guillermo; Ferland, Joannie; Kandels‐Lewis, Stefanie; Liu, Yunxiao; Marec, Claudie; Pesant, Stéphane; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Tremblay, J. E.; Vik, Dean; Acinas, Silvia G. CSIC ORCID ; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; Vargas, Colomban de; Follows, Michael J.; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Kandels‐Lewis, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice CSIC ORCID; Ogata, Hiroyuki; Pesant, Stéphane; Poulton, N.J.; Raes, Jeroen; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sunagawa, Shinichi; Wincker, Patrick; Culley, Alexander I.; Dutilh, Bas E.; Roux, Simon; Sullivan, Matthew B.artículo
openAccessCHM2018-Ferretti.pdf.jpg11-Jul-2018Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut MicrobiomeFerretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; de Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi,Rosanna; Cologna,Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè,Caterina; Postai,Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, María Carmen CSIC ORCID; Koren,Omry; Tateo, Saverio; Soffiati,Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicolaartículo
openAccessProfiling cellular diversity in sponges informs animal cell type and nervous system evolution.pdf.jpg5-Nov-2021Profiling cellular diversity in sponges informs animal cell type and nervous system evolutionHernández-Plaza, Ana; Musser, Jacob M.; Schippers, Klaske J.; Nickel, Michael; Mizzon, Giulia; Kohn, Andrea B.; Pape, Constantin; Ronchi, Paolo; Papadopoulos, Nikolaos; Tarashansky, Alexander J.; Hammel, Jörg U.; Wolf, Florian; Liang, Cong; Cantalapiedra, Carlos P; Achim, Kaia; Schieber, Nicole L.; Pan, Leslie; Ruperti, Fabian; Francis, Warren R.; Vargas, Sergio; Kling, Svenja; Renkert, Maike; Polikarpov, Maxim; Bourenkov, Gleb; Feuda, Roberto; Gaspar, Imre; Burkhardt, Pawel; Wang, Bo; Bork, Peer; Beck, Martin; Schneider, Thomas R.; Kreshuk, Anna; Wörheide, Gert; Huerta-Cepas, Jaime; Moroz, Leonid L.; Arendt, Detlevartículo
openAccessproGenomes2_an_improved.pdf.jpg1-Jan-2020proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomesMende, Daniel R.; Letunic, Ivica; Maistrenko, Oleksandr M.; Schmidt, Thomas Sebastian; Milanese, Alessio; Paoli, Lucas; Hernández-Plaza, Ana; Orakov, Askarbek; Forslund, Sofía K.; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; Coelho, Luis Pedro; Bork, Peerartículo
openAccessproGenomes3_approaching_one_million.pdf.jpg6-Jan-2023proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomesFullam, Anthony; Letunic, Ivica; Schmidt, Thomas Sebastian; Ducarmon, Quinten R.; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr M.; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-López, Claudia; Schudoma, Christian; Szklarczyk, Damian; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; von Mering, Christian; Bork, Peer; Mende, Daniel R.artículo
openAccessdrosophila.pdf.jpg16-Dec-2008Selective maintenance of Drosophila tandemly arranged duplicated genes during evolutionQuijano, Carlos CSIC; Tomancak, Pavel; López-Marti, Jesús; Suyama, Mikita; Bork, Peer; Milán, Marco; Torrents, David; Manzanares, Miguel CSIC ORCIDartículo
closedAccess2018Structure and function of the global topsoil microbiomeBahram, Mohammad; Hildebrand, Falk; Forslund, Sofía K.; Anderson, J. L.; Soudzilovskaia, Nadejda A.; Bodegom, P. M.; Bengtsson-Palme, J.; Anslan, Sten; Coelho, Luis Pedro; Harend, H.; Huerta-Cepas, Jaime; Medema, M. H.; Maltz, M. R.; Mundra, S.; Olsson, Pal Axel; Pent, M.; Põlme, S.; Sunagawa, Shinichi; Ryberg, M.; Tedersoo, Leho; Bork, Peerartículo
closedAccessFeb-2016Tara Oceans' approach and new challenges in studying the ocean microbiome at global scaleSunagawa, Shinichi; Coelho, Luis Pedro; Chaffron, Samuel; Wincker, Patrick; Karsenti, Eric; Acinas, Silvia G. CSIC ORCID ; Bork, Peerpóster de congreso