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Browsing by Author Acemel, Rafael D.

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openAccess4Cin_Irastorza_Art_PV.pdf.jpg3-Sep-20184Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C dataIrastorza-Azcárate, Ibai CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Maeso, Ignacio CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID ; Devos, Damien P. CSIC ORCIDartículo
openAccessCommon_Royo_Art_PV.pdf.jpg8-Mar-2018A common copy-number variant within SIRPB1 correlates with human out-of-Africa migration after genetic drift correctionRoyo, José Luis CSIC ORCID; Valls, Joan; Acemel, Rafael D. CSIC ORCID; Gómez-Marín, Carlos CSIC ORCID; Pascual-Pons, Mariona; Lupiañez, Arantxa; Gómez-Skarmeta, José Luis CSIC ORCID ; Fibla, Joanartículo
openAccessAcemelRD.pdf.jpg2016A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulationAcemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Irastorza-Azcárate, Ibai CSIC ORCID; Marlétaz, Ferdinand; Gómez-Marín, Carlos CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Diaz, Sergio G.; Holland, Peter W. H.; Devos, Damien P. CSIC ORCID; Maeso, Ignacio CSIC ORCID; Escrivá, Héctor CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID artículo
openAccessAmphioxus_Marlétaz_Art_PV.pdf.jpg6-Dec-2018Amphioxus functional genomics and the origins of vertebrate gene regulationMarlétaz, Ferdinand; Firbas, Panos; Maeso, Ignacio CSIC ORCID; Tena, Juan J. CSIC ORCID; Bogdanovic, Ozren CSIC ORCID; Perry, M.; Wyatt, Christopher D. R.; Calle-Mustienes, Elisa de la CSIC ORCID; Bertrand, Stephanie; Burguera, Demian; Acemel, Rafael D. CSIC ORCID; Van Heeringen, Simon J.; Naranjo, Silvia CSIC ORCID; Herrera-Úbeda, Carlos; Skvortsova, Ksenia; Jiménez-Gancedo, Sandra CSIC; Aldea, Daniel; Marquez, Yamile; Buono, Lorena CSIC ORCID; Kozmikova, Iryna; Permanyer, Jon; Louis, Alexandra; Albuixech-Crespo, Beatriz; Petillon, Yann Le; Leon, Anthony; Subirana, Lucie; Balwierz, Piotr J.; Duckett, Paul Edward; Farahani, Ensieh; Aury, Jean‐Marc; Mangenot, Sophie; Wincker, Patrick; Albalat, Ricard; Benito-Gutiérrez, Èlia; Cañestro, Cristian; Castro, Filipe; D’Aniello, Salvatore; Ferrier, David E. K.; Huang, Shengfeng; Laudet, Vincent; Marais, Gabriel A.B.; Pontarotti, Pierre; Schubert, Michael; Seitz, Hervé; Somorjai, Ildiko; Takahashi, Tokiharu; Mirabeau, Olivier; Xu, Anlong; Yu, Jr-Kai; Carninci, Piero; Martínez-Morales, Juan Ramón CSIC ORCID; Roest Crollius, Hugues; Kozmik, Zbynek; Weirauch, Matthew T.; Garcia-Fernàndez, Jordi; Lister, Ryan; Lenhard, Boris; Holland, Peter W. H.; Escrivá, Héctor CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID ; Irimia, Manuelartículo
openAccessAncient_Touceda_PV_Art2020.pdf.jpgOct-2020Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome DuplicationsTouceda-Suárez, María; Kita, Elizabeth M.; Acemel, Rafael D. CSIC ORCID; Firbas, Panos; Magri, Marta Silvia CSIC ORCID; Naranjo, Silvia CSIC ORCID; Tena, Juan J. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID ; Maeso, Ignacio CSIC ORCID; Irimia, Manuelartículo
closedAccessaccesoRestringido.pdf.jpg2016Biofilm formation-defective mutants in Pseudomonas putidaLópez-Sánchez, Aroa CSIC; Platero, Ana Isabel CSIC ORCID; Díaz-Romero, Alberto CSIC; Acemel, Rafael D. CSIC ORCID; Govantes, Fernando CSIC ORCIDartículo
openAccessCOGEDE-S.pdf.jpg2016Cis-regulatory landscapes in development and evolutionMaeso, Ignacio CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID artículo
openAccessComputer_Acemel_Art_PV.pdf.jpg2018Computer simulation study of early bacterial biofilm developmentAcemel, Rafael D. CSIC ORCID; Govantes, Fernando CSIC ORCID; Cuetos, Alejandroartículo
closedAccessaccesoRestringido.pdf.jpg6-Oct-2021CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expressionFranke, Martin CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Neto, Ana; Almuedo-Castillo, María CSIC ORCID; Irastorza-Azcárate, Ibai CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Santos-Pereira, José M. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID comunicación de congreso
openAccessCTCF_knockout_Franke_PV_Art2021.pdf.jpg13-Sep-2021CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expressionFranke, Martin CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Neto, Ana; Almuedo-Castillo, María CSIC ORCID; Irastorza-Azcárate, Ibai CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Santos-Pereira, José M. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID artículo
closedAccessaccesoRestringido.pdf.jpg17-May-2021CTCF knockout in zebrafish links chromatin structure and developmental gene regulationFranke, Martin CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Neto, Ana; Acemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Santos-Pereira, José M. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID póster de congreso
openAccessCTCF_Franke_ComCong_2020.pdf.jpg18-Nov-2020CTCF knockout in zebrafish links chromatin structure and developmental gene regulationFranke, Martin CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Neto, Ana; Acemel, Rafael D. CSIC ORCID; Tena, Juan J. CSIC ORCID; Santos-Pereira, José M. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID actas de congreso
closedAccessaccesoRestringido.pdf.jpg2013Demixing and nematic behaviour of oblate hard spherocylinders and hard spheres mixtures: Monte Carlo simulation and Parsons-Lee theoryGámez, Francisco CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Cuetos, Alejandroartículo
closedAccessaccesoRestringido.pdf.jpg13-Sep-2021Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organizationMagri, Marta Silvia CSIC ORCID; Voronov, D.; Foley, S.; Franke, Martin CSIC ORCID; Cuomo, C.; Gil-Galvez, Alejandro; Acemel, Rafael D. CSIC ORCID; Paganos, P.; Rancelovic, J.; Firbas, Panos; Hinman, V. F.; Arnone, M. I.; Maeso, Ignacio CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID comunicación de congreso
closedAccessaccesoRestringido.pdf.jpg16-Jun-2015Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains bordersGómez-Marín, Carlos CSIC ORCID; Tena, Juan J. CSIC ORCID; Acemel, Rafael D. CSIC ORCID; López-Mayorga, Macarena CSIC; Naranjo, Silvia CSIC ORCID; Calle-Mustienes, Elisa de la CSIC ORCID; Maeso, Ignacio CSIC ORCID; Beccari, Leonardo CSIC ORCID; Bovolenta, Paola CSIC ORCID; Carvajal, Jaime J. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID artículo
closedAccessaccesoRestringido.pdf.jpg2017Exploring the role of nuclear organization in zebrafish development with hichip using histone mark antibodiesAcemel, Rafael D. CSIC ORCID; Santos Pereira, J. M.; Naranjo, Silvia CSIC ORCID; Tena, Juan J. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID comunicación de congreso
openAccessGain of gene regulatory_Gil_PV_Art2022.pdf.jpg9-Mar-2022Gain of gene regulatory network interconnectivity at the origin of vertebratesGil-Galvez, Alejandro; Jiménez-Gancedo, Sandra CSIC; Pérez-Posada, Alberto; Franke, Martin CSIC ORCID; Acemel, Rafael D. CSIC ORCID; Lin, Che-Yi; Chou, Cindy; Su, Yi-Hsien; Yu, Jr-Kai; Bertrand, Stephanie; Schubert, Michael; Escrivá, Héctor CSIC ORCID; Tena, Juan J. CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID artículo
openAccessMacroH2As regulate_Corujo_PV_Art2022.pdf.jpg2022MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokinesCorujo, David; Malinverni, Roberto; Carrillo-Reixach, Juan; Meers, Oliver; Garcia-Jaraquemada, Arce; Pannérer, Marguerite-Marie Le; Valero, Vanesa; Pérez, Ainhoa; Río-Álvarez, Álvaro Del; Royo, Laura CSIC; Pérez-González, Beatriz; Raurell, Helena; Acemel, Rafael D. CSIC ORCID; Santos-Pereira, José M. CSIC ORCID; Garrido-Pontnou, Marta; Gómez-Skarmeta, José Luis CSIC ORCID ; Pasquali, Lorenzo; Manyé, Josep; Armengol, Carolina; Buschbeck, Marcusartículo
openAccessMultidimensional chromatin_PV_Art2022.pdf.jpg2022Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancersBordeira-Carriço, Renata; Teixeira, Joana; Duque, Marta; Galhardo, Mafalda; Ribeiro, Diogo; Acemel, Rafael D. CSIC ORCID; Firbas, Panos; Tena, Juan J. CSIC ORCID; Eufrásio, Ana; Marques, Joana; Ferreira, Fábio J.; Freitas, Telmo; Carnero, Amancio CSIC ORCID; Gómez-Skarmeta, José Luis CSIC ORCID ; Bessa, José CSIC ORCIDartículo
openAccessBaranasic_et_al_2022.pdf.jpgJul-2022Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elementsBaranasic, Damir; Hörtenhuber, Matthias; Balwierz, Piotr J.; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Várnai, Csilla; Hadzhiev, Yavor; Jiménez-González, Ada; Li, Nan; Wragg, Joseph; D’Orazio, Fabio M.; Relic, Dorde; Pachkov, Mikhail; Díaz, Noelia CSIC ORCID; Hernández-Rodríguez, Benjamín; Chen, Zelin; Stoiber, Marcus; Dong, Michaël; Stevens, Irene; Ross, Samuel E.; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C.; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R.; Acemel, Rafael D. CSIC ORCID; Naranjo, Silvia CSIC ORCID; Łapiński, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M.; Winata, Cecilia; Eeden, Freek van; Vaquerizas Erdocia, Juan Manuel; Gómez-Skarmeta, José Luis CSIC ORCID ; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren CSIC ORCID; Nimwegen, Erik van; Westerfield, Monte; Wardle, Fiona C.; Daub, Carsten O.; Lenhard, Boris; Müller, Ferencartículo