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closedAccessaccesoRestringido.pdf.jpg2021A large SARS-CoV-2 outbreak in a long-term care facility: lessons learned from a molecular epidemiological analysisEscalas Bordoy, A.; Valles, Xavier; Not, Anna; Chiner-Oms, Álvaro CSIC ORCID ; Torres, J.; Juan-Andres, Concha; Pardo-Amil, Vanessa; García, Irene CSIC ORCID ; Guitart Rossell, Gemma; Cambra Cibeira, Laura; Saludes, Verónica; Casañ, C.; Gimenez, Montserrat; Blanco, Ignacio; Torres-Puente, Manuela CSIC ORCID ; Cancino-Muñoz, Irving CSIC ORCID; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID ; Martró, Elisapóster de congreso
openAccess2021 Microbial Genomics 7-000740.pdf.jpgDec-2021Accuracy of an amplicon-sequencing nanopore approach to identify variants in tuberculosis drug-resistance-associated genesMariner-Llicer, Carla CSIC; Goig, Galo A. CSIC ORCID; Zaragoza-Infante, Laura; Torres-Puente, Manuela CSIC ORCID ; Villamayor, Luis; Navarro, David; Borras, Rafael; Chiner-Oms, Álvaro CSIC ORCID ; Comas, Iñaki CSIC ORCID artículo
openAccess2021 Commun Biol 4-1322.pdf.jpg24-Nov-2021An evolutionary functional genomics approach identifies novel candidate regions involved in isoniazid resistance in Mycobacterium tuberculosisFurió, Victoria CSIC ORCID; Moreno-Molina, Miguel CSIC ORCID ; Chiner-Oms, Álvaro CSIC ORCID ; Villamayor, Luis M.; Torres-Puente, Manuela CSIC ORCID ; Comas, Iñaki CSIC ORCID artículo
openAccesscoplat.pdf.jpg2022Co-evolution of the SARS-CoV-2 genome and sequencing approaches in the PTI+ Global Health Genomic Surveillance PlatformCano-Jiménez, Pablo CSIC; Torres-Puente, Manuela CSIC ORCID ; Cancino-Muñoz, Irving CSIC ORCID; Gómez-Navarro, Inmaculada CSIC ORCID; Jiménez-Serrano, Santiago CSIC ORCID; Chiner-Oms, Álvaro CSIC ORCID ; Inal, Göktuğ; Comas, Iñaki CSIC ORCID póster de congreso
openAccesscompletetransmi.pdf.jpg2021Complete analysis of the epidemiological scenario around a SARS-CoV-2 reinfection: previous infection events and subsequent transmissionPérez-Lago, Laura; Pérez Latorre, Leire; Herranz, Marta; Tejerina, Francisco; Sola-Campoy, Pedro J.; Sicilia, Jon; Suárez-González, Julia; Andrés-Zayas, Cristina; Chiner-Oms, Álvaro CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; García-González, Neris; Comas, Iñaki CSIC ORCID ; González-Candelas, Fernando CSIC ORCID; Martínez-Laperche, Carolina; Catalán, Pilar; Muñoz, Patricia; García de Viedma, Darío CSIC ORCIDartículo
openAccess2021 mSphere 6-e0059621.pdf.jpg8-Sep-2021Complete Analysis of the Epidemiological Scenario around a SARS-CoV-2 Reinfection: Previous Infection Events and Subsequent TransmissionPérez Lago, Laura; Pérez Latorre, Leire; Herranz, Marta; Tejerina, Francisco; Sola-Campoy, Pedro J.; Sicilia, Jon; Suárez-González, Julia; Andrés-Zayas, Cristina; Chiner-Oms, Álvaro CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; García-González, Neris; Comas, Iñaki CSIC ORCID ; González-Candelas, Fernando CSIC ORCID; Martínez-Laperche, Carolina; Catalán, Pilar; Muñoz, Patricia; García de Viedma, Darío CSIC ORCID; Gregorio Marañón Microbiology-ID COVID 19 Study Groupartículo
openAccess2019_J Infect Dis_suppl_supplementary_material.pdf.jpg15-Mar-2019Cryptic resistance mutations associated to misdiagnoses of Multidrug-resistant tuberculosisCancino-Muñoz, Irving CSIC ORCID; Moreno-Molina, Miguel CSIC ORCID ; Furió, Victoria CSIC ORCID; Goig, Galo A. CSIC ORCID; Torres-Puente, Manuela CSIC ORCID ; Chiner-Oms, Álvaro CSIC ORCID ; Villamayor, Luis M.; Sanz, Francisco; Guna-Serrano, María Remedio; Comas, Iñaki CSIC ORCID artículo
openAccessDETECTION OF GENOMIC VARIANTS.pdf.jpg10-Feb-2021Detection Of Genomic Variants Of SARS-CoV-2 Circulating In Wastewater By High-Throughput SequencingPérez-Cataluña, Alba CSIC ORCID; Chiner-Oms, Álvaro CSIC ORCID ; Cuevas Ferrando, Enric CSIC ORCID; Díaz-Reolid, Azahara CSIC; Falcó, Irene CSIC ORCID; Randazzo, Walter CSIC ORCID; Girón-Guzmán, Inés CSIC ORCID; Allende, Ana CSIC ORCID ; Bracho, María Alma; Comas, Iñaki CSIC ORCID ; Sánchez Moragas, Gloria CSIC ORCIDpreprint
closedAccessaccesoRestringido.pdf.jpg2021Emergence of adaptive mutations of the spike In SARS-CoV-2Ruiz-Rodríguez, Paula CSIC ORCID ; Francés-Gómez, Clara CSIC ORCID; Chiner-Oms, Álvaro CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; Bracho, María Alma; D'Auria, Giuseppe; González-Candelas, Fernando CSIC ORCID; Geller, Ron CSIC ORCID ; Comas, Iñaki CSIC ORCID ; Seqcovid-Spain Consortiumcomunicación de congreso
openAccess2022 mSphere 7-e0034622.pdf.jpg21-Dec-2022Epidemiological and Genomic Analysis of a Large SARS-CoV-2 Outbreak in a Long-Term Care Facility in Catalonia, SpainBordoy, Antoni E.; Valles, Xavier; Not, Anna; Chiner-Oms, Álvaro CSIC ORCID ; Saludes, Verónica; Torres Cervos, Judit; Roset Roig, Anna; Juan-Andres, Concha; Sureda, Helena; Pardo-Amil, Vanessa; García, Irene CSIC ORCID ; Guitart Rossell, Gemma; Cambra Cibeira, Laura; Casan, Cristina; Gimenez, Montserrat; Blanco, Ignacio; Torres-Puente, Manuela CSIC ORCID ; Cancino-Muñoz, Irving CSIC ORCID; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID ; Martró, Elisaartículo
openAccess2016 Evolutionary Bioinformatics 12 277.pdf.jpg28-Nov-2016EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect OutliersChiner-Oms, Álvaro CSIC ORCID ; González-Candelas, Fernando CSIC ORCIDartículo
openAccess2021 Comas ECCMID_Evol Virul.pdf.jpg9-Jul-2021Evolution, virulence and immunogenicity of relevant SARS-CoV-2 spike mutantsCoscollá, Mireia CSIC ORCID; Ruiz-Rodríguez, Paula CSIC ORCID ; Francés-Cuesta, Carlos CSIC ORCID; Geller, Ron CSIC ORCID ; Chiner-Oms, Álvaro CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; Marina, Alberto CSIC ORCID ; Martínez-Priego, Llucia CSIC ORCID CVN; D'Auria, Giuseppe; López, Mariana G. CSIC ORCID ; Cancino-Muñoz, Irving CSIC ORCID; Torres-Puente, Manuela CSIC ORCID ; Bracho, María Alma; Ruiz-Hueso, Paula; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID póster de congreso
openAccess2021.03.08.21253075.full.pdf.jpg12-Mar-2021Evolutionary and phenotypic characterization of spike mutations in a new SARS-CoV-2 Lineage reveals two Variants of InterestRuiz-Rodríguez, Paula CSIC ORCID ; Francés-Gómez, Clara CSIC ORCID; Chiner-Oms, Álvaro CSIC ORCID ; López, Mariana G. CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; Cancino-Muñoz, Irving CSIC ORCID; Ruiz-Hueso, Paula; Torres-Puente, Manuela CSIC ORCID ; Bracho, María Alma; D’Auria, Giuseppe; Martínez-Priego, Llucia CSIC ORCID CVN; Guerreiro, Manuel; Montero-Alonso, Marta; Gómez, María Dolores; Piñana, José Luis; Seqcovid-Spain Consortium; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID ; Marina, Alberto CSIC ORCID ; Geller, Ron CSIC ORCID ; Coscollá, Mireia CSIC ORCIDpreprint
openAccess2021 mBio 12-02315-21.pdf.jpg16-Nov-2021Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2Ruiz-Rodríguez, Paula CSIC ORCID ; Francés-Gómez, Clara CSIC ORCID; Chiner-Oms, Álvaro CSIC ORCID ; López, Mariana G. CSIC ORCID ; Jiménez-Serrano, Santiago CSIC ORCID; Cancino-Muñoz, Irving CSIC ORCID; Ruiz-Hueso, Paula; Torres-Puente, Manuela CSIC ORCID ; Bracho, María Alma; D’Auria, Giuseppe; Martínez-Priego, Llucia CSIC ORCID CVN; Guerreiro, Manuel; Montero-Alonso, Marta; Gómez, María Dolores; Piñana, José Luis; Seqcovid-Spain Consortium; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID ; Marina, Alberto CSIC ORCID ; Geller, Ron CSIC ORCID ; Coscollá, Mireia CSIC ORCIDartículo
openAccess2019 Genome Biol Evol 11-2619.pdf.jpg1-Sep-2019Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella SpeciesGomez-Valero, Laura; Chiner-Oms, Álvaro CSIC ORCID ; Comas, Iñaki CSIC ORCID ; Buchrieser, Carmenartículo
openAccess2019_Tesis_A_Chiner-Oms.pdf.jpg28-Jun-2019Evolutionary systems biology of the Mycobacterium tuberculosis complexChiner-Oms, Álvaro CSIC ORCID tesis doctoral
openAccess2021 Travel Med Infect Dis 44-102167 vers aut.pdf.jpgNov-2021Expanded tracking of a Beijing Mycobacterium tuberculosis strain involved in an outbreak in FranceGenestet, Charlotte; Perdigão, João; Herranz, Marta; Maus, Sandra R.; Pérez Lago, Laura; Berland, Jean-Luc; Chiner-Oms, Álvaro CSIC ORCID ; Comas, Iñaki CSIC ORCID ; Muñoz, Patricia; Portugal, Isabel; Dumitrescu, Oana; García de Viedma, Darioartículo
openAccess2022 Microbial Genomics 8-000844.pdf.jpgJul-2022Fine-grain population structure and transmission patterns of Mycobacterium tuberculosis in southern Mozambique, a high TB/HIV burden areaSaavedra Cervera, Belén; López, Mariana G. CSIC ORCID ; Chiner-Oms, Álvaro CSIC ORCID ; García Marín, Ana María CSIC; Cancino-Muñoz, Irving CSIC ORCID; Torres-Puente, Manuela CSIC ORCID ; Villamayor, Luis; Madrazo-Moya, Carlos Francisco CSIC; Mambuque, Edson; Sequera, Guillermo Víctor; Respeito, Durval; Blanco, Silvia CSIC; Augusto, Orvalho; López-Varela, Elisa; Garcia-Basteiro, Alberto L.; Comas, Iñaki CSIC ORCID artículo
openAccess2022 PNAS 119-e2113600119.pdf.jpg26-Apr-2022Gene evolutionary trajectories in Mycobacterium tuberculosis reveal temporal signs of selectionChiner-Oms, Álvaro CSIC ORCID ; López, Mariana G. CSIC ORCID ; Moreno-Molina, Miguel CSIC ORCID ; Furió, Victoria CSIC ORCID; Comas, Iñaki CSIC ORCID artículo
openAccess2018_Scientific Reports_Article_22237.pdf.jpg28-Feb-2018Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversityChiner-Oms, Álvaro CSIC ORCID ; González-Candelas, Fernando CSIC ORCID; Comas, Iñaki CSIC ORCID artículo