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openAccessA complete analysis of the epidemiological scenario_PerezLago.pdf.jpg7-Dec-2020A complete analysis of the epidemiological scenario around a SARS-CoV-2 reinfection: previous infection events and subsequent transmissionPérez-Lago, Laura; Pérez Latorre, Leire; Herranz, Marta; Tejerina, Francisco; Sola-Campoy, Pedro J.; Sicilia, Jon; Suárez González, Julia; Andrés Zayas, Cristina; Chiner-Oms, Álvaro ; Jiménez Serrano, Santiago; García-González, Neris; Comas, Iñaki  ; González-Candelas, Fernando; Martínez-Laperche, Carolina; Catalán, Pilar; Muñoz, Patricia; García de Viedma, Daríopreprint
openAccess2019_J Infect Dis_suppl_supplementary_material.pdf.jpg15-Mar-2019Cryptic resistance mutations associated to misdiagnoses of Multidrug-resistant tuberculosisCancino-Muñoz, Irving; Moreno-Molina, Miguel; Furió, Victoria; Goig, Galo A.; Torres-Puente, Manuela ; Chiner-Oms, Álvaro ; Villamayor, Luis M.; Sanz, Francisco; Guna-Serrano, María Remedio; Comas, Iñaki  artículo
openAccessDETECTION OF GENOMIC VARIANTS.pdf.jpg10-Feb-2021Detection Of Genomic Variants Of SARS-CoV-2 Circulating In Wastewater By High-Throughput SequencingPérez Cataluña, Alba; Chiner-Oms, Álvaro ; Cuevas Ferrando, Enric; Díaz-Reolid, Azahara; Falcó, Irene; Randazzo, Walter; Girón-Guzmán, Inés; Allende, Ana  ; Bracho, María Alma; Comas, Iñaki  ; Sánchez Moragas, Gloria preprint
openAccess2016 Evolutionary Bioinformatics 12 277.pdf.jpg28-Nov-2016EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect OutliersChiner-Oms, Álvaro ; González-Candelas, Fernandoartículo
openAccess2021.03.08.21253075.full.pdf.jpg12-Mar-2021Evolutionary and phenotypic characterization of spike mutations in a new SARS-CoV-2 Lineage reveals two Variants of InterestRuiz-Rodríguez, Paula; Frances-Gomez, Clara; Chiner-Oms, Álvaro ; López, Mariana G. ; Jiménez Serrano, Santiago; Cancino-Muñoz, Irving; Ruiz-Hueso, Paula; Torres-Puente, Manuela ; Bracho, María Alma; D’Auria, Giuseppe; Martínez-Priego, Llucia ; Guerreiro, Manuel; Montero-Alonso, Marta; Gómez, María Dolores; Piñana, José Luis; Seqcovid-Spain Consortium; González-Candelas, Fernando; Comas, Iñaki  ; Marina, Alberto  ; Geller, Ron; Coscolla, Mireiapreprint
openAccess2019 Genome Biol Evol 11-2619.pdf.jpg1-Sep-2019Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella SpeciesGomez-Valero, Laura; Chiner-Oms, Álvaro ; Comas, Iñaki  ; Buchrieser, Carmenartículo
openAccess2019_Tesis_A_Chiner-Oms.pdf.jpg28-Jun-2019Evolutionary systems biology of the Mycobacterium tuberculosis complexChiner-Oms, Álvaro tesis doctoral
openAccess2018_Scientific Reports_Article_22237.pdf.jpg28-Feb-2018Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversityChiner-Oms, Álvaro ; González-Candelas, Fernando; Comas, Iñaki  artículo
openAccess2019 Nat Commun 10-3994.pdf.jpg5-Sep-2019Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complexChiner-Oms, Álvaro ; Berney, Michael; Boinett, Christine; González-Candelas, Fernando; B. Young, Douglas; Gagneux, Sebastien; Jacobs Jr, William R.; Parkhill, Julian; Cortes, Teresa; Comas, Iñaki  artículo
openAccess2019 Science Advances 5-eaaw3307.pdf.jpg12-Jun-2019Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complexChiner-Oms, Álvaro ; Sánchez-Busó, Leonor; Corander, Jukka; Gagneux, S.; Harris, Simon R.; Young, D.; González-Candelas, Fernando; Comas, Iñaki  artículo
openAccess2020 Euro Surveill 25-32-2001410.pdf.jpgAug-2020Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020Alm, Erik; Broberg, Eeva K.; Connor, Thomas; Hodcroft, Emma B.; Komissarov, Andrey B.; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard A.; O’Toole, Áine; Pereyaslov, Dmitriy; WHO European Region sequencing laboratories; GISAID EpiCoV group; Chiner-Oms, Álvaro ; Cancino-Muñoz, Irving; Comas, Iñaki  ; Goig, Galo A.; Torres-Puente, Manuela ; López, Mariana G. ; González-Candelas, Fernandoartículo
openAccess2020 Sci Rep 10-18954.pdf.jpg3-Nov-2020Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptorSevilla, Lisa M. ; Bigas, Judit; Chiner-Oms, Álvaro ; Comas, Iñaki  ; Sentandreu, Vicente; Pérez, Paloma  artículo
openAccess2020 INFORME_SeqCOVID_V1.4_CSIC-IC.pdf.jpg26-Oct-2020INFORME Proyecto COV20/00140 Una perspectiva genómica de la pandemia: lecciones en salud públicaComas, Iñaki  ; Chiner-Oms, Álvaro ; López, Mariana G. ; González-Candelas, Fernandoinforme científico
openAccess2018 Sci Rep 8-15382.pdf.jpg18-Oct-2018Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebaseEzewudo, Matthew; Borens, Amanda; Chiner-Oms, Álvaro ; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M.; Hanna, Debra; Liwski, Richard; Zignol, Matteo; Gilpin, Christopher; Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M.; Crook, Derrick; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Iñaki  ; Engelthaler, David M; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; McNerney, Ruth; Cirillo, Daniela M.; Schito, Marco; Rodwell, Timothy C; Posey, Jamesartículo
openAccess2019 Infect Genet Evol 72-10 vers aut.pdf.jpg26-Feb-2019Large genomics datasets shed light on the evolution of the Mycobacterium tuberculosis complexChiner-Oms, Álvaro ; Comas, Iñaki  artículo
openAccess2018 Front Microbiol 8-02661.pdf.jpg19-Jan-2018Mycobacterium tuberculosis Acquires Limited Genetic Diversity in Prolonged Infections, Reactivations and Transmissions Involving Multiple HostsHerranz, Marta; Pole, Ilva; Ozere, Iveta; Chiner-Oms, Álvaro ; Martínez-Lirola, Miguel; Pérez-García, Felipe; Gijón, Paloma; Ruiz Serrano, María Jesús; Clotet Romero, Laura; Cuevas, Oscar; Comas, Iñaki  ; Bouza, Emilio; Pérez-Lago, Laura; García de Viedma, Daríoartículo
openAccess2020 Nat Commun 11-1949.pdf.jpg23-Apr-2020Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β productionSousa, Jeremy; Ca, Baltazar; Maceiras, Ana Raquel; Simoes-Costa, Luisa; Fonseca, Kaori L.; Fernandes, Ana Isabel; Ramos, Angélica; Carvalho, Teresa; Barros, Leandro; Magalhaes, Carlos; Chiner-Oms, Álvaro ; Machado, Henrique; Veiga, Maria Isabel; Singh, Albel; Pereira, Rui; Amorim, António; Vieira, Jorge; Vieira, Cristina P.; Bhatt, Apoorva; Rodrigues, Fernando; Rodrigues, Pedro N. S.; Gagneux, Sebastien; Castro, António Gil; Guimaraes, João Tiago; Bastos, Helder Novais; Osorio, Nuno S.; Comas, Iñaki  ; Saraiva, Margaridaartículo
openAccess2020 Comas The Conversation 140107.pdf.jpg7-Jun-2020¿Qué sabemos hasta hoy sobre la transmisión del SARS-CoV-2?Comas, Iñaki  ; Chiner-Oms, Álvaro ; García-Marín, Ana; González-Candelas, Fernandorevista divulgativa
openAccess2020 Sci Rep 10-2704.pdf.jpg17-Feb-2020Screening of inmates transferred to Spain reveals a Peruvian prison as a reservoir of persistent Mycobacterium tuberculosis MDR strains and mixed infectionsAbascal, Estefanía; Herranz, Marta; Acosta, Fermín; Agapito, Juan; Cabibbe, Andrea M.; Monteserin, Johana; Ruiz Serrano, María Jesús; Gijón, Paloma; Fernández-González, Francisco; Lozano, Nuria; Chiner-Oms, Álvaro ; Cáceres, Tatiana; Gómez Pintado, Pilar; Acín, Enrique; Valencia, Eddy; Muñoz, Patricia; Comas, Iñaki  ; Cirillo, Daniela M.; Ritacco, Viviana; Gotuzzo, Eduardo; García de Viedma, Daríoartículo
openAccess2019 Emerg Infect Dis 25-507.pdf.jpgMar-2019Simplified Model to Survey Tuberculosis Transmission in Countries Without Systematic Molecular Epidemiology ProgramsDomínguez, Juan; Acosta, Fermín; Pérez-Lago, Laura; Sambrano, Dilcia; Batista, Victoria; De La Guardia, Carolina; Abascal, Estefanía; Chiner-Oms, Álvaro ; Comas, Iñaki  ; González, Prudencio; Bravo, Jaime; Del Cid, Pedro; Rosas, Samantha; Muñoz, Patricia; Goodridge, Amador; García de Viedma, Daríoartículo