Por favor, use este identificador para citar o enlazar a este item:
http://hdl.handle.net/10261/197566
COMPARTIR / EXPORTAR:
SHARE CORE BASE | |
Visualizar otros formatos: MARC | Dublin Core | RDF | ORE | MODS | METS | DIDL | DATACITE | |
Título: | Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome |
Autor: | Salazar, Guillem CSIC ORCID; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta CSIC ORCID ; Roux, Simon; Sánchez Fernández, Pablo CSIC ORCID ; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Ferland, Joannie; Kandels‐Lewis, Stefanie; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Acinas, Silvia G. CSIC ORCID ; Babin, Marcel; Bork, Peer; Bowler, Chris; Vargas, Colomban de; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Karp-Boss, Lee; Karsenti, Eric; Ogata, Hiroyuki; Pesant, Stéphane; Speich, Sabrina; Sullivan, Matthew B.; Wincker, Patrick; Sunagawa, Shinichi | Fecha de publicación: | nov-2019 | Editor: | Elsevier | Citación: | Cell 179(5): 1068-1083 (2019) | Resumen: | Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagenomes from 126 globally distributed sampling stations and establish a resource of 47 million genes to study community-level transcriptomes across depth layers from pole-to-pole. We examine gene expression changes and community turnover as the underlying mechanisms shaping community transcriptomes along these axes of environmental variation and show how their individual contributions differ for multiple biogeochemically relevant processes. Furthermore, we find the relative contribution of gene expression changes to be significantly lower in polar than in non-polar waters and hypothesize that in polar regions, alterations in community activity in response to ocean warming will be driven more strongly by changes in organismal composition than by gene regulatory mechanisms | Descripción: | This article is contribution number 94 of Tara Oceans.-- 37 pages, 20 figures, 1 table, supplementary information https://doi.org/10.1016/j.cell.2019.10.014.-- All raw reads are available through ENA at https://www.ebi.ac.uk/ena using the identifiers listed in https://doi.org/10.5281/zenodo.3473199. Processed data are accessible at https://www.ebi.ac.uk/biostudies/studies/S-BSST297, and additional information is provided in https://doi.org/10.5281/zenodo.3473199 and at the companion website: https://www.ocean-microbiome.org. Scripts used in this manuscript are available through a Github repository at https://github.com/SushiLab/omrgc_v2_scripts | Versión del editor: | https://doi.org/10.1016/j.cell.2019.10.014 | URI: | http://hdl.handle.net/10261/197566 | DOI: | 10.1016/j.cell.2019.10.014 | Identificadores: | doi: 10.1016/j.cell.2019.10.014 issn: 0092-8674 e-issn: 1097-4172 |
Aparece en las colecciones: | (ICM) Artículos |
Ficheros en este ítem:
Fichero | Descripción | Tamaño | Formato | |
---|---|---|---|---|
Salazar_et_al_2019.pdf | 10,1 MB | Adobe PDF | Visualizar/Abrir | |
Salazar_et_al_2019_suppl_table.xlsx | 815,89 kB | Microsoft Excel XML | Visualizar/Abrir | |
Salazar_et_al_2019_video.mp4 | 135,88 MB | Unknown | Visualizar/Abrir | |
Salazar_et_al_2019_affilliations.docx | 16,22 kB | Microsoft Word XML | Visualizar/Abrir |
CORE Recommender
PubMed Central
Citations
110
checked on 18-abr-2024
SCOPUSTM
Citations
179
checked on 23-abr-2024
WEB OF SCIENCETM
Citations
160
checked on 23-feb-2024
Page view(s)
313
checked on 23-abr-2024
Download(s)
250
checked on 23-abr-2024