English   español  
Por favor, use este identificador para citar o enlazar a este item: http://hdl.handle.net/10261/171459
COMPARTIR / IMPACTO:
Estadísticas
logo share SHARE logo core CORE   Add this article to your Mendeley library MendeleyBASE

Visualizar otros formatos: MARC | Dublin Core | RDF | ORE | MODS | METS | DIDL
Exportar a otros formatos:

Título

“Out of the can”: a draft genome assembly, liver transcriptome, and nutrigenomics of the european sardine, sardina pilchardus

AutorMachado, André M.; Tørresen, Ole K.; Kabeya, Naoki; Couto, Alvarina; Petersen, Bent; Felício, Mónica; Campos, Paula F.; Fonseca, Elza; Bandarra, Narcisa; Lopes-Marques, Mónica; Ferraz, Renato; Ruivo, Raquel; Fonseca, Miguel M.; Jentoft, Sissel; Monroig, Óscar ; da Fonseca, Rute R.; C. Castro, L. Filipe
Palabras claveEuropean sardine
Draft genome
Teleosts
Comparative genomics
Long chain polyunsaturated fatty acids
Fecha de publicación9-oct-2018
EditorMultidisciplinary Digital Publishing Institute
CitaciónGenes 9(10): 485 (2018)
ResumenClupeiformes, such as sardines and herrings, represent an important share of worldwide fisheries. Among those, the European sardine (Sardina pilchardus, Walbaum 1792) exhibits significant commercial relevance. While the last decade showed a steady and sharp decline in capture levels, recent advances in culture husbandry represent promising research avenues. Yet, the complete absence of genomic resources from sardine imposes a severe bottleneck to understand its physiological and ecological requirements. We generated 69 Gbp of paired-end reads using Illumina HiSeq X Ten and assembled a draft genome assembly with an N50 scaffold length of 25,579 bp and BUSCO completeness of 82.1% (Actinopterygii). The estimated size of the genome ranges between 655 and 850 Mb. Additionally, we generated a relatively high-level liver transcriptome. To deliver a proof of principle of the value of this dataset, we established the presence and function of enzymes (Elovl2, Elovl5, and Fads2) that have pivotal roles in the biosynthesis of long chain polyunsaturated fatty acids, essential nutrients particularly abundant in oily fish such as sardines. Our study provides the first omics dataset from a valuable economic marine teleost species, the European sardine, representing an essential resource for their effective conservation, management, and sustainable exploitation.
Versión del editorhttps://doi.org/10.3390/genes9100485
URIhttp://hdl.handle.net/10261/171459
DOI10.3390/genes9100485
E-ISSN2073-4425
Aparece en las colecciones: (IATS) Artículos
Ficheros en este ítem:
Fichero Descripción Tamaño Formato  
genes-09-00485.pdf2,04 MBAdobe PDFVista previa
Visualizar/Abrir
Mostrar el registro completo
 

Artículos relacionados:


NOTA: Los ítems de Digital.CSIC están protegidos por copyright, con todos los derechos reservados, a menos que se indique lo contrario.