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Title

AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks

AuthorsLanza, Val F. ; Baquero, Fernando; Cruz, Fernando de la ; Coque, Teresa M.
Issue Date2017
PublisherOxford University Press
CitationBioinformatics 33(2): 283-285 (2017)
AbstractAcCNET (Accessory genome Constellation Network) is a Perl application that aims to compare accessory genomes of a large number of genomic units, both at qualitative and quantitative levels. Using the proteomes extracted from the analysed genomes, AcCNET creates a bipartite network compatible with standard network analysis platforms. AcCNET allows merging phylogenetic and functional information about the concerned genomes, thus improving the capability of current methods of network analysis. The AcCNET bipartite network opens a new perspective to explore the pangenome of bacterial species, focusing on the accessory genome behind the idiosyncrasy of a particular strain and/or population.
URIhttp://hdl.handle.net/10261/164734
Identifiersdoi: 10.1093/bioinformatics/btw601
issn: 1367-4811
e-issn: 1460-2059
Appears in Collections:(IBBTEC) Artículos
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