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Browsing by Author Bastolla, Ugo

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RightsIssue DateTitleAuthor(s)
closedAccess2010181-196 Quantifying the evolutionary divergence of protein structures: The role of function change and function conservationPascual-García, Alberto; Abia, David; Méndez, Raúl; Nido, G. S.; Bastolla, Ugo
closedAccess2008An efficient conformational sampling method for homology modelingHan, Rongsheng; Leo-Macías, Alejandra; Zerbino, Daniel; Bastolla, Ugo; Contreras-Moreira, Bruno; Ortíz, Ángel R.
closedAccess2013Characterizing conformation changes in proteins through the torsional elastic responseDos Santos, Helena G.; Klett, Javier; Méndez, Raúl; Bastolla, Ugo
openAccess14-Jun-2010Comparison of translation loads for standard and alternative genetic codesSammet, Stefanie Gabriele; Bastolla, Ugo; Porto, Markus
openAccess27-Mar-2009Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein StructuresPascual-García, Alberto; Abia, David; Ortíz, Ángel R.; Bastolla, Ugo
closedAccess2013Detecting selection for negative design in proteins through an improved model of the misfolded stateMinning, Jonas; Porto, Markus; Bastolla, Ugo
openAccess16-Jul-2014Detecting Selection on Protein Stability through Statistical Mechanical Models of Folding and EvolutionBastolla, Ugo
closedAccess2008Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequencesBastolla, Ugo; Ortíz, Ángel R.; Porto, Markus; Teichert, Florian
openAccess14-May-2010High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTHTeichert, Florian; Minning, Jonas; Bastolla, Ugo; Porto, Markus
closedAccess2013High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication originsLombraña, Rodrigo; Almeida, Ricardo; Revuelta, Isabel; Madeira, Sofía; Herranz, Gonzalo; Saiz, Néstor; Bastolla, Ugo; Gómez, María
closedAccess24-Nov-2009In Memoriam of Angel R. Ortiz (1966-2008)Abia, David; Bastolla, Ugo; Chacón, Pablo; Fábrega Clavería, Carme; Gago, Federico; Morreale, Antonio; Tramontano, Anna
closedAccess2008Local interactions in protein folding determined through an inverse folding modelBastolla, Ugo; Porto, Markus; Ortíz, Angel R.
closedAccess2012Modeling structural and genomic constraints in the evolution of proteinsBastolla, Ugo
openAccess6-May-2010Mutation Bias Favors Protein Folding Stability in the Evolution of Small PopulationsMéndez, Raúl; Fritsche, Miriam; Porto, Markus; Bastolla, Ugo
closedAccess11-Nov-2011Protein disorder in the centrosome correlates with complexity in cell types numberNido, G. S.; Méndez, Raúl; Pascual-García, Alberto; Abia, David; Bastolla, Ugo
closedAccess2013Protein evolution along phylogenetic histories under structurally constrained substitution modelsArenas, Miguel; Dos Santos, Helena G.; Posadas, Pavid; Bastolla, Ugo
closedAccess2005Protein evolution in viral quasispecies under selective pressure: A thermodynamic and phylogenetic analysisBriones, Carlos; Bastolla, Ugo
openAccess31-May-2006A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data BankBastolla, Ugo; Porto, Markus; Román, Eduardo H.; Vendruscolo, Michele
closedAccess2010Quantifying the evolutionary divergence of protein structures: The role of function change and function conservationPascual-García, Alberto; Abia, David; Méndez, Raúl; Nido, G. S.; Bastolla, Ugo
openAccessJan-2003Reductive genome evolution in Buchnera aphidicolaHam, Roeland C.H.J. van; Kamerbeek, Judith; Palacios, Carmen; Rausell, Carolina; Abascal, Federico; Bastolla, Ugo; Fernández, José M.; Jiménez, Luis; Postigo, Marina; Silva-Moreno, Francisco, et al